Best TWAS P=3.92e-09 · Best GWAS P=1.41e-08 conditioned to 0.486
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ATP13A2 | 0.08 | 0.06 | lasso | 5 | 0.08 | 6.9e-10 | 5.5 | 5.2 | 1.7e-07 | 0.90 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Visceral Omentum | MST1L | 0.15 | 0.08 | enet | 21 | 0.11 | 1.7e-06 | 5.7 | -5.2 | 2.0e-07 | -0.82 | 0.01 | 0.99 | FALSE |
3 | GTEx | Brain Cerebellum | MST1L | 0.21 | 0.13 | lasso | 2 | 0.09 | 1.7e-03 | 5.5 | -5.7 | 1.6e-08 | -0.92 | 0.01 | 0.94 | FALSE |
4 | GTEx | Cells EBV-transformed lymphocytes | MST1L | 0.31 | 0.10 | lasso | 6 | 0.14 | 2.2e-05 | -5.1 | -5.2 | 1.8e-07 | -0.79 | 0.02 | 0.96 | FALSE |
5 | GTEx | Esophagus Mucosa | MST1P2 | 0.32 | 0.06 | enet | 22 | 0.12 | 3.3e-08 | -4.7 | 5.2 | 1.6e-07 | 0.51 | 0.03 | 0.96 | FALSE |
6 | GTEx | Heart Atrial Appendage | MST1P2 | 0.20 | 0.09 | lasso | 4 | 0.09 | 6.7e-05 | -4.7 | 5.4 | 5.7e-08 | 0.85 | 0.01 | 0.98 | FALSE |
7 | GTEx | Liver | MST1P2 | 0.20 | 0.14 | lasso | 4 | 0.10 | 7.6e-04 | 5.5 | 5.9 | 3.9e-09 | 0.92 | 0.01 | 0.96 | TRUE |
8 | GTEx | Nerve Tibial | MFAP2 | 0.09 | 0.06 | lasso | 3 | 0.07 | 9.7e-06 | 5.7 | 5.5 | 4.0e-08 | 0.89 | 0.01 | 0.99 | FALSE |
9 | GTEx | Pituitary | MST1L | 0.39 | 0.22 | lasso | 5 | 0.20 | 1.2e-05 | 5.5 | -5.3 | 1.4e-07 | -0.86 | 0.01 | 0.94 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | MST1P2 | 0.14 | 0.03 | lasso | 4 | 0.01 | 5.0e-02 | 5.5 | 5.3 | 1.4e-07 | 0.95 | 0.01 | 0.94 | FALSE |
11 | GTEx | Testis | CROCC | 0.18 | 0.03 | lasso | 4 | 0.04 | 1.0e-02 | 5.5 | -5.6 | 2.8e-08 | -0.79 | 0.03 | 0.76 | FALSE |
12 | GTEx | Testis | MST1L | 0.45 | 0.20 | enet | 34 | 0.25 | 2.5e-11 | -5.1 | -5.7 | 9.0e-09 | -0.82 | 0.02 | 0.98 | FALSE |
13 | GTEx | Thyroid | MST1P2 | 0.18 | 0.11 | lasso | 9 | 0.13 | 2.7e-10 | 5.5 | 5.4 | 7.7e-08 | 0.88 | 0.00 | 1.00 | FALSE |
14 | GTEx | Whole Blood | MST1L | 0.08 | 0.02 | enet | 12 | 0.04 | 6.3e-05 | -3.1 | -5.3 | 1.0e-07 | -0.79 | 0.02 | 0.97 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ATP13A2 | 0.05 | 0.00 | enet | 1 | 0.01 | 1.6e-02 | -5.6 | 5.6 | 1.8e-08 | 0.78 | 0.00 | 0.68 | FALSE |
16 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MST1P9 | 0.11 | 0.11 | blup | 38 | 0.08 | 1.3e-04 | -5.6 | -5.4 | 7.7e-08 | -0.79 | 0.00 | 0.99 | FALSE |
17 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MST1P9 | 0.15 | 0.13 | enet | 15 | 0.13 | 1.5e-14 | -4.7 | -5.7 | 1.0e-08 | -0.79 | 0.02 | 0.98 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MFAP2 | 0.17 | 0.22 | enet | 10 | 0.23 | 6.8e-26 | -5.6 | 5.6 | 2.8e-08 | 0.84 | 0.00 | 1.00 | FALSE |
19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MST1P9 | 0.15 | 0.13 | enet | 14 | 0.17 | 6.2e-19 | -5.6 | -5.2 | 2.3e-07 | -0.69 | 0.00 | 1.00 | FALSE |
20 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MST1P9 | 0.04 | 0.02 | lasso | 5 | 0.02 | 1.0e-03 | -5.1 | -5.5 | 3.7e-08 | -0.86 | 0.02 | 0.92 | FALSE |
21 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MST1P9 | 0.08 | 0.05 | blup | 38 | 0.08 | 4.2e-06 | 5.5 | -5.5 | 3.0e-08 | -0.85 | 0.01 | 0.98 | FALSE |
22 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MST1P9 | 0.13 | 0.09 | lasso | 6 | 0.11 | 3.3e-11 | 5.5 | -5.3 | 1.5e-07 | -0.91 | 0.01 | 0.99 | FALSE |