Best TWAS P=1.48e-14 · Best GWAS P=7.14e-15 conditioned to 0.0798
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | -6.9 | 6.3 | 3.9e-10 | 0.15 | 0.05 | 0.95 | FALSE |
2 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -6.7 | -6.8 | 1.5e-11 | -0.12 | 0.02 | 0.98 | FALSE |
3 | GTEx | Adipose Subcutaneous | UBXN2A | 0.06 | 0.04 | lasso | 5 | 0.04 | 5.2e-04 | -5.9 | -5.4 | 5.9e-08 | -0.73 | 0.27 | 0.71 | FALSE |
4 | GTEx | Adipose Visceral Omentum | UBXN2A | 0.10 | 0.08 | enet | 29 | 0.03 | 9.8e-03 | -6.2 | -6.4 | 1.9e-10 | -0.67 | 0.08 | 0.90 | FALSE |
5 | GTEx | Artery Aorta | NCOA1 | 0.15 | 0.00 | enet | 15 | 0.01 | 1.4e-01 | -4.9 | -5.6 | 1.8e-08 | 0.03 | 0.06 | 0.15 | FALSE |
6 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | -5.9 | -6.5 | 9.5e-11 | -0.14 | 0.41 | 0.59 | FALSE |
7 | GTEx | Artery Tibial | UBXN2A | 0.12 | 0.06 | enet | 24 | 0.09 | 1.5e-07 | -3.1 | -5.7 | 1.6e-08 | -0.72 | 0.81 | 0.19 | FALSE |
8 | GTEx | Artery Tibial | RP11-443B20.1 | 0.17 | 0.08 | enet | 40 | 0.09 | 8.2e-08 | -5.9 | -5.7 | 1.3e-08 | -0.11 | 0.07 | 0.92 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -6.7 | 7.5 | 4.8e-14 | 0.07 | 0.06 | 0.93 | TRUE |
10 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -6.7 | 7.3 | 3.1e-13 | 0.11 | 0.04 | 0.89 | FALSE |
11 | GTEx | Colon Transverse | UBXN2A | 0.11 | 0.01 | enet | 8 | 0.03 | 8.7e-03 | -5.9 | -6.3 | 2.5e-10 | -0.75 | 0.07 | 0.70 | FALSE |
12 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -5.2 | -7.3 | 3.2e-13 | -0.30 | 0.07 | 0.21 | FALSE |
13 | GTEx | Lung | UBXN2A | 0.09 | 0.06 | enet | 7 | 0.07 | 6.1e-06 | -3.4 | -5.7 | 1.3e-08 | -0.72 | 0.30 | 0.70 | FALSE |
14 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -5.9 | 7.2 | 9.0e-13 | 0.14 | 0.03 | 0.97 | FALSE |
15 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -5.9 | 6.5 | 5.7e-11 | 0.15 | 0.04 | 0.95 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | UBXN2A | 0.08 | 0.04 | enet | 17 | 0.03 | 1.3e-03 | -5.9 | -5.2 | 1.9e-07 | -0.62 | 0.57 | 0.34 | FALSE |
17 | GTEx | Small Intestine Terminal Ileum | UBXN2A | 0.18 | 0.08 | enet | 33 | 0.16 | 2.5e-04 | -6.1 | -6.0 | 1.7e-09 | -0.84 | 0.03 | 0.90 | FALSE |
18 | GTEx | Spleen | UBXN2A | 0.31 | 0.11 | enet | 19 | 0.17 | 4.1e-05 | 7.0 | -7.7 | 1.5e-14 | -0.81 | 0.04 | 0.92 | TRUE |
19 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -6.6 | -6.6 | 3.4e-11 | -0.09 | 0.03 | 0.97 | FALSE |
20 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -7.1 | -7.0 | 2.7e-12 | -0.12 | 0.01 | 0.99 | FALSE |
21 | GTEx | Whole Blood | UBXN2A | 0.17 | 0.07 | lasso | 8 | 0.09 | 2.1e-08 | -3.3 | -6.6 | 3.7e-11 | -0.84 | 0.04 | 0.96 | FALSE |
22 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -6.6 | -6.7 | 2.2e-11 | -0.13 | 0.02 | 0.98 | FALSE |
23 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -7.1 | 7.4 | 1.8e-13 | 0.13 | 0.01 | 0.99 | FALSE |
24 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADCY3 | 0.05 | 0.03 | blup | 81 | 0.03 | 5.0e-07 | -4.5 | 6.0 | 2.2e-09 | 0.09 | 0.54 | 0.42 | FALSE |
25 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -5.5 | 6.2 | 5.5e-10 | 0.05 | 0.02 | 0.43 | FALSE |
26 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY3 | 0.08 | 0.03 | enet | 16 | 0.03 | 1.5e-04 | -4.4 | 5.2 | 1.6e-07 | 0.00 | 0.03 | 0.25 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -5.6 | 6.9 | 4.4e-12 | 0.07 | 0.04 | 0.93 | FALSE |