Best TWAS P=2.75e-15 · Best GWAS P=8.65e-14 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DCXR | 0.14 | 0.07 | enet | 17 | 0.10 | 3.4e-12 | 4.1 | 7.1 | 1.7e-12 | -0.48 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | LRRC45 | 0.09 | 0.10 | enet | 7 | 0.10 | 1.2e-11 | -6.4 | 6.1 | 1.3e-09 | -0.74 | 0.81 | 0.19 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | MYADML2 | 0.52 | 0.43 | enet | 15 | 0.45 | 3.6e-60 | -6.6 | -6.6 | 3.9e-11 | 0.74 | 0.55 | 0.45 | FALSE |
4 | GTEx | Adipose Subcutaneous | LRRC45 | 0.23 | 0.06 | lasso | 3 | 0.05 | 1.0e-04 | -6.4 | 6.9 | 4.7e-12 | -0.77 | 0.61 | 0.28 | FALSE |
5 | GTEx | Adipose Visceral Omentum | LRRC45 | 0.18 | 0.03 | enet | 12 | 0.10 | 9.0e-06 | -6.3 | 5.2 | 1.7e-07 | -0.77 | 0.61 | 0.30 | FALSE |
6 | GTEx | Artery Aorta | DCXR | 0.34 | 0.17 | enet | 25 | 0.21 | 1.4e-11 | 4.6 | 5.2 | 1.7e-07 | -0.32 | 1.00 | 0.00 | FALSE |
7 | GTEx | Artery Tibial | LRRC45 | 0.09 | 0.07 | lasso | 4 | 0.04 | 2.0e-04 | -6.4 | 6.8 | 1.3e-11 | -0.84 | 0.43 | 0.49 | FALSE |
8 | GTEx | Artery Tibial | CCDC57 | 0.08 | 0.03 | enet | 7 | 0.05 | 5.8e-05 | -3.3 | 5.2 | 1.8e-07 | -0.36 | 0.41 | 0.45 | FALSE |
9 | GTEx | Brain Cerebellum | RP11-1055B8.4 | 0.25 | 0.27 | lasso | 2 | 0.27 | 1.3e-08 | 5.4 | -5.4 | 7.7e-08 | 0.10 | 0.00 | 1.00 | TRUE |
10 | GTEx | Cells Transformed fibroblasts | LRRC45 | 0.08 | 0.08 | enet | 3 | 0.08 | 2.6e-06 | -6.4 | 6.5 | 6.1e-11 | -0.78 | 0.26 | 0.73 | FALSE |
11 | GTEx | Esophagus Muscularis | DCXR | 0.18 | 0.08 | lasso | 5 | 0.05 | 9.2e-04 | 4.6 | 5.8 | 7.4e-09 | -0.33 | 0.63 | 0.11 | FALSE |
12 | GTEx | Heart Atrial Appendage | LRRC45 | 0.19 | 0.06 | enet | 9 | 0.12 | 6.7e-06 | -6.2 | 7.0 | 2.1e-12 | -0.85 | 0.30 | 0.60 | FALSE |
13 | GTEx | Nerve Tibial | DCXR | 0.19 | 0.06 | enet | 20 | 0.10 | 1.4e-07 | 4.1 | 5.2 | 1.7e-07 | -0.22 | 0.86 | 0.03 | FALSE |
14 | GTEx | Skin Not Sun Exposed Suprapubic | DCXR | 0.12 | 0.00 | enet | 13 | 0.00 | 2.3e-01 | 4.5 | 6.3 | 3.0e-10 | -0.39 | 0.08 | 0.15 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | DCXR | 0.08 | 0.11 | lasso | 7 | 0.09 | 4.6e-08 | 4.5 | 5.2 | 2.2e-07 | -0.23 | 1.00 | 0.00 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | RP11-1055B8.4 | 0.21 | 0.10 | lasso | 3 | 0.10 | 7.4e-09 | 5.4 | -5.2 | 1.8e-07 | 0.09 | 0.00 | 1.00 | FALSE |
17 | GTEx | Thyroid | ASPSCR1 | 0.23 | 0.15 | enet | 19 | 0.09 | 1.2e-07 | -6.5 | 7.1 | 1.1e-12 | -0.81 | 0.47 | 0.53 | FALSE |
18 | GTEx | Thyroid | DCXR | 0.35 | 0.20 | lasso | 5 | 0.30 | 5.1e-23 | 4.5 | 5.4 | 5.6e-08 | -0.25 | 1.00 | 0.00 | FALSE |
19 | YFS | Blood | ASPSCR1 | 0.11 | 0.07 | lasso | 9 | 0.06 | 7.9e-20 | -7.5 | 7.9 | 2.8e-15 | -0.98 | 0.00 | 1.00 | TRUE |
20 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LRRC45 | 0.02 | 0.03 | blup | 36 | 0.02 | 1.5e-03 | -6.4 | 6.7 | 2.2e-11 | -0.76 | 0.02 | 0.59 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PYCR1 | 0.02 | 0.01 | blup | 9 | 0.01 | 1.1e-02 | -6.6 | 7.2 | 8.5e-13 | -0.83 | 0.00 | 0.66 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LRRC45 | 0.05 | 0.07 | lasso | 6 | 0.06 | 9.5e-08 | -6.4 | 6.2 | 5.8e-10 | -0.77 | 0.09 | 0.91 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYADML2 | 0.03 | 0.03 | blup | 10 | 0.03 | 1.1e-04 | -6.8 | -7.0 | 3.7e-12 | 0.83 | 0.02 | 0.90 | FALSE |
24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NOTUM | 0.06 | 0.02 | enet | 2 | 0.02 | 4.7e-03 | -5.8 | -6.9 | 6.3e-12 | 0.79 | 0.01 | 0.60 | FALSE |
25 | The Cancer Genome Atlas | Lung Adenocarcinoma | NPB | 0.03 | 0.01 | enet | 3 | 0.01 | 1.1e-02 | -6.3 | 5.9 | 3.9e-09 | -0.74 | 0.00 | 0.69 | FALSE |
26 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LRRC45 | 0.10 | 0.02 | blup | 35 | 0.04 | 8.0e-03 | -4.7 | 6.5 | 5.6e-11 | -0.70 | 0.01 | 0.42 | FALSE |
27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | STRA13 | 0.05 | 0.03 | lasso | 3 | 0.02 | 1.8e-03 | -6.4 | 6.4 | 1.8e-10 | -0.76 | 0.08 | 0.46 | FALSE |
28 | The Cancer Genome Atlas | Thyroid Carcinoma | DCXR | 0.09 | 0.03 | blup | 38 | 0.09 | 9.5e-09 | 4.5 | 7.1 | 1.3e-12 | -0.53 | 0.24 | 0.75 | FALSE |