Best TWAS P=1.15e-12 · Best GWAS P=3.95e-12 conditioned to 1.73e-08
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | BCS1L | 0.06 | 0.01 | enet | 9 | 0.04 | 2.3e-04 | -3.1 | 5.3 | 1.0e-07 | -0.01 | 0.06 | 0.24 | FALSE |
2 | GTEx | Adipose Visceral Omentum | PNKD | 0.11 | 0.00 | enet | 31 | 0.00 | 2.3e-01 | -4.1 | 7.1 | 1.1e-12 | -0.20 | 0.14 | 0.04 | TRUE |
3 | GTEx | Adipose Visceral Omentum | TMBIM1 | 0.17 | 0.03 | enet | 31 | 0.03 | 1.1e-02 | -4.9 | 5.3 | 8.8e-08 | 0.00 | 0.49 | 0.03 | FALSE |
4 | GTEx | Artery Aorta | TMBIM1 | 0.17 | 0.20 | enet | 29 | 0.19 | 1.2e-10 | -4.8 | 5.5 | 3.2e-08 | -0.01 | 1.00 | 0.00 | FALSE |
5 | GTEx | Breast Mammary Tissue | RP11-378A13.1 | 0.27 | 0.26 | enet | 20 | 0.30 | 1.3e-15 | -4.8 | 5.2 | 2.6e-07 | 0.00 | 1.00 | 0.00 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | RP11-378A13.1 | 0.18 | 0.14 | lasso | 6 | 0.13 | 4.6e-05 | -4.9 | 5.1 | 2.8e-07 | -0.03 | 0.40 | 0.03 | FALSE |
7 | GTEx | Colon Sigmoid | RP11-378A13.1 | 0.31 | 0.33 | enet | 23 | 0.34 | 6.0e-13 | -5.0 | 5.3 | 1.1e-07 | 0.00 | 1.00 | 0.00 | FALSE |
8 | GTEx | Muscle Skeletal | RP11-378A13.1 | 0.19 | 0.27 | enet | 23 | 0.31 | 1.7e-30 | -4.9 | 5.3 | 1.2e-07 | -0.03 | 1.00 | 0.00 | FALSE |
9 | GTEx | Pancreas | RP11-378A13.1 | 0.29 | 0.14 | enet | 24 | 0.16 | 4.4e-07 | -5.0 | 5.4 | 6.9e-08 | -0.01 | 0.98 | 0.00 | FALSE |
10 | GTEx | Testis | RP11-378A13.1 | 0.37 | 0.18 | enet | 22 | 0.22 | 2.7e-10 | -4.7 | 5.3 | 8.7e-08 | 0.00 | 1.00 | 0.00 | FALSE |
11 | METSIM | Adipose | AAMP | 0.03 | 0.00 | bslmm | 433 | 0.01 | 7.1e-03 | -4.2 | 5.6 | 2.0e-08 | -0.06 | 0.37 | 0.02 | FALSE |
12 | METSIM | Adipose | CXCR2 | 0.04 | 0.00 | blup | 436 | 0.02 | 1.1e-03 | -4.7 | 6.1 | 8.2e-10 | 0.03 | 0.28 | 0.02 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | RP11-378A13.1 | 0.44 | 0.64 | bslmm | 431 | 0.64 | 1.1e-107 | -5.0 | 5.7 | 1.3e-08 | -0.06 | 1.00 | 0.00 | FALSE |