Best TWAS P=1.49e-09 · Best GWAS P=6.67e-09 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Nerve Tibial | LINC00961 | 0.18 | 0.17 | lasso | 5 | 0.17 | 2.4e-12 | -5.8 | 5.9 | 3.2e-09 | -0.99 | 0 | 1.00 | FALSE |
| 2 | GTEx | Stomach | LINC00961 | 0.22 | 0.10 | lasso | 3 | 0.05 | 2.1e-03 | -5.8 | 5.8 | 7.5e-09 | -0.98 | 0 | 0.97 | FALSE |
| 3 | GTEx | Thyroid | LINC00961 | 0.22 | 0.07 | enet | 20 | 0.11 | 7.5e-09 | -5.8 | 5.6 | 2.0e-08 | -0.69 | 0 | 1.00 | FALSE |
| 4 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC158376 | 0.13 | 0.09 | lasso | 5 | 0.08 | 4.5e-08 | -5.8 | 6.0 | 1.5e-09 | -0.99 | 0 | 1.00 | TRUE |