Best TWAS P=2.86e-12 · Best GWAS P=1.55e-11 conditioned to 0.531
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LOC100129961 | 0.17 | 0.14 | enet | 9 | 0.14 | 2.6e-17 | -6.7 | -7.0 | 2.9e-12 | 0.93 | 0.01 | 0.99 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | TMEM163 | 0.05 | 0.02 | lasso | 7 | 0.01 | 5.9e-03 | 3.8 | -5.5 | 4.6e-08 | 0.64 | 0.25 | 0.26 | FALSE |
3 | GTEx | Artery Aorta | CCNT2 | 0.12 | 0.12 | lasso | 3 | 0.11 | 1.9e-06 | 5.1 | 5.1 | 3.0e-07 | -0.52 | 0.60 | 0.24 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | AC016725.4 | 0.27 | 0.18 | lasso | 4 | 0.24 | 8.3e-07 | 5.9 | -5.4 | 7.4e-08 | 0.63 | 0.18 | 0.60 | FALSE |
5 | GTEx | Esophagus Muscularis | TMEM163 | 0.09 | 0.05 | lasso | 6 | 0.05 | 4.8e-04 | 4.5 | -5.3 | 8.6e-08 | 0.72 | 0.08 | 0.90 | FALSE |
6 | GTEx | Nerve Tibial | AC016725.4 | 0.15 | 0.06 | lasso | 6 | 0.02 | 8.1e-03 | 5.9 | -5.9 | 4.5e-09 | 0.65 | 0.48 | 0.48 | FALSE |
7 | GTEx | Prostate | AC016725.4 | 0.27 | 0.03 | enet | 23 | 0.13 | 4.6e-04 | -6.1 | -6.4 | 1.7e-10 | 0.78 | 0.04 | 0.90 | FALSE |
8 | GTEx | Testis | CCNT2 | 0.31 | 0.26 | lasso | 6 | 0.26 | 9.3e-12 | 6.1 | 5.8 | 5.8e-09 | -0.60 | 0.34 | 0.66 | FALSE |
9 | GTEx | Testis | AC016725.4 | 0.18 | 0.09 | lasso | 6 | 0.09 | 6.3e-05 | -6.7 | 6.7 | 2.0e-11 | -0.95 | 0.02 | 0.98 | FALSE |
10 | GTEx | Thyroid | CCNT2 | 0.09 | 0.10 | lasso | 2 | 0.09 | 1.8e-07 | 5.9 | 5.8 | 6.4e-09 | -0.62 | 0.56 | 0.43 | FALSE |
11 | GTEx | Whole Blood | TMEM163 | 0.11 | 0.06 | lasso | 7 | 0.06 | 5.0e-06 | 4.5 | -5.8 | 8.2e-09 | 0.63 | 0.66 | 0.29 | FALSE |
12 | NTR | Blood | CCNT2 | 0.01 | 0.00 | blup | 370 | 0.00 | 6.7e-02 | 6.1 | 7.0 | 3.4e-12 | -0.69 | 0.15 | 0.44 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | CCNT2 | 0.06 | 0.03 | enet | 27 | 0.05 | 1.6e-06 | 5.1 | 5.9 | 4.6e-09 | -0.72 | 0.28 | 0.72 | FALSE |
14 | YFS | Blood | CCNT2 | 0.01 | 0.01 | blup | 363 | 0.01 | 6.3e-05 | 5.1 | 5.5 | 3.9e-08 | -0.70 | 0.34 | 0.52 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACMSD | 0.04 | 0.01 | blup | 46 | 0.02 | 2.2e-03 | 5.9 | 6.8 | 1.4e-11 | -0.87 | 0.02 | 0.84 | FALSE |
16 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | TMEM163 | 0.33 | 0.36 | enet | 18 | 0.37 | 4.7e-22 | 4.7 | -5.2 | 2.3e-07 | 0.63 | 0.01 | 0.98 | FALSE |