Best TWAS P=2.11e-11 · Best GWAS P=5.91e-11 conditioned to 0.0102
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Vagina | HMG20A | 0.21 | 0.01 | enet | 17 | 0.05 | 0.0231 | 3.7 | 6.7 | 2.1e-11 | -0.71 | 0.04 | 0.65 | TRUE |
| 2 | The Cancer Genome Atlas | Rectum Adenocarcinoma | HMG20A | 0.22 | 0.18 | lasso | 2 | 0.12 | 0.0011 | -6.2 | 6.1 | 1.1e-09 | -0.96 | 0.00 | 0.85 | FALSE |