[Hub]/) : Traits : Qualifications: College or University degree : ← →

chr2:99,468,341-101,731,705

Best TWAS P=1.99e-16 · Best GWAS P=1.12e-20 conditioned to 0.0666

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
12	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	LONRF2	0.06	0.04	blup	69	0.04	3.4e-05	-6.9	8.2	2.0e-16	0.67	0.30	0.69	TRUE
16	The Cancer Genome Atlas	Prostate Adenocarcinoma	AFF3	0.06	0.00	blup	244	0.01	1.3e-02	-4.4	8.1	5.5e-16	0.53	0.09	0.08	TRUE
14	The Cancer Genome Atlas	Brain Lower Grade Glioma	AFF3	0.03	0.01	blup	240	0.02	6.6e-03	4.5	5.4	5.6e-08	0.36	0.11	0.53	TRUE
4	GTEx	Artery Aorta	AFF3	0.14	0.06	lasso	5	0.07	1.2e-04	9.1	8.1	7.2e-16	0.84	0.01	0.99	FALSE
3	GTEx	Adrenal Gland	CHST10	0.18	0.04	lasso	4	0.05	5.6e-03	6.4	-7.7	1.4e-14	-0.70	0.30	0.23	FALSE
5	GTEx	Artery Tibial	AFF3	0.06	0.04	enet	6	0.04	4.3e-04	-7.5	7.5	5.6e-14	0.73	0.11	0.85	FALSE
8	GTEx	Skin Sun Exposed Lower leg	LONRF2	0.05	0.03	lasso	2	0.02	9.3e-03	-7.1	7.4	1.9e-13	0.55	0.33	0.09	FALSE
13	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	LONRF2	0.05	0.08	lasso	2	0.08	2.9e-05	-7.4	7.3	2.1e-13	0.65	0.15	0.42	FALSE
6	GTEx	Cells EBV-transformed lymphocytes	CHST10	0.25	0.15	lasso	4	0.12	9.1e-05	-7.6	7.1	1.2e-12	0.62	0.34	0.15	FALSE
9	GTEx	Thyroid	CHST10	0.05	0.05	lasso	5	0.03	2.6e-03	6.4	6.9	4.0e-12	0.59	0.37	0.44	FALSE
2	CommonMind	Brain Pre-frontal Cortex	CHST10	0.05	0.02	blup	474	0.04	1.0e-05	-6.8	6.9	5.0e-12	0.59	0.62	0.36	FALSE
7	GTEx	Muscle Skeletal	LONRF2	0.07	0.08	lasso	4	0.08	2.5e-08	6.6	6.6	3.0e-11	0.53	1.00	0.00	FALSE
1	CommonMind	Brain Pre-frontal Cortex	AFF3	0.31	0.24	enet	32	0.25	9.2e-31	6.2	6.5	5.9e-11	0.59	1.00	0.00	FALSE
17	The Cancer Genome Atlas	Thyroid Carcinoma	CHST10	0.04	0.04	lasso	3	0.03	2.6e-04	6.4	6.4	1.6e-10	0.52	0.04	0.94	FALSE
11	ROSMAP	Brain Pre-frontal Cortex	AFF3	0.31	0.24	enet	38	0.25	3.5e-32	6.1	5.8	5.6e-09	0.51	1.00	0.00	FALSE
10	METSIM	Adipose	LONRF2	0.04	0.01	bslmm	445	0.02	1.9e-03	6.6	5.5	4.2e-08	0.46	0.59	0.12	FALSE
15	The Cancer Genome Atlas	Brain Lower Grade Glioma	CHST10	0.04	0.03	blup	73	0.02	1.5e-03	-6.9	5.4	5.4e-08	0.47	0.01	0.96	FALSE