[Hub]/) : Traits : Qualifications: A levels/AS levels or equivalent :

chr2:100,193,898-101,731,705

Best TWAS P=6.02e-10 · Best GWAS P=2.37e-10 conditioned to 1

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 CommonMind Brain Pre-frontal Cortex CHST10 0.05 0.02 blup 474 0.04 1.0e-05 -5.9 5.4 6.8e-08 -0.77 0.16 0.84 FALSE
2 GTEx Cells EBV-transformed lymphocytes CHST10 0.25 0.15 lasso 4 0.12 9.1e-05 -6.3 6.1 1.2e-09 -0.94 0.01 0.97 FALSE
3 GTEx Muscle Skeletal LONRF2 0.07 0.08 lasso 4 0.08 2.5e-08 5.3 5.4 8.1e-08 -0.81 0.33 0.67 FALSE
4 GTEx Skin Sun Exposed Lower leg LONRF2 0.05 0.03 lasso 2 0.02 9.3e-03 -5.8 5.8 6.1e-09 -0.85 0.10 0.71 FALSE
5 GTEx Thyroid CHST10 0.05 0.05 lasso 5 0.03 2.6e-03 5.2 5.6 1.7e-08 -0.89 0.02 0.97 FALSE
6 METSIM Adipose LONRF2 0.04 0.01 bslmm 445 0.02 1.9e-03 5.6 5.5 3.8e-08 -0.71 0.12 0.82 FALSE
7 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma LONRF2 0.06 0.04 blup 69 0.04 3.4e-05 -5.6 6.2 6.0e-10 -0.85 0.08 0.91 FALSE
8 The Cancer Genome Atlas Kidney Renal Papillary Cell Carcinoma LONRF2 0.05 0.08 lasso 2 0.08 2.9e-05 -6.2 6.2 6.0e-10 -0.98 0.00 0.98 TRUE
9 The Cancer Genome Atlas Thyroid Carcinoma CHST10 0.04 0.04 lasso 3 0.03 2.6e-04 5.2 5.2 1.8e-07 -0.80 0.03 0.95 FALSE