460 significantly associated models · 88 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 41130424 | 42542658 | 1 | 1 | 2.3e-07 | 3.0e-07 | 9.4e-04 | 58 | FOXO6 |
2 | 1 | 43152610 | 45153116 | 10 | 4 | 3.1e-12 | 3.9e-13 | 8.2e-01 | 100 | ARTN MED8 ST3GAL3 |
3 | 1 | 71163715 | 73435171 | 1 | 1 | 8.2e-08 | 1.8e-08 | 1.8e-06 | 28 | NEGR1 |
4 | 2 | 43899918 | 45698128 | 1 | 1 | 3.0e-08 | 5.4e-10 | 5.0e-03 | 80 | CAMKMT |
5 | 2 | 100193898 | 101731705 | 2 | 1 | 6.0e-10 | 2.4e-10 | 1.0e+00 | 100 | LONRF2 |
6 | 2 | 156594333 | 158165818 | 1 | 1 | 8.3e-09 | 5.1e-09 | 3.2e-03 | 74 | GPD2 |
7 | 2 | 161297929 | 162790882 | 1 | 1 | 4.0e-08 | 5.3e-10 | 1.5e-03 | 74 | TANK |
8 | 3 | 48029118 | 51043528 | 29 | 7 | 3.9e-26 | 1.4e-23 | 1.0e+00 | 100 | APEH IP6K2 MST1R RBM6 RNF123 UBA7 |
9 | 3 | 84767271 | 86367480 | 1 | 1 | 3.4e-09 | 2.7e-08 | 5.6e-03 | 75 | CADM2 |
10 | 4 | 151637154 | 153275701 | 1 | 1 | 2.4e-07 | 8.6e-08 | 1.2e-04 | 48 | FAM160A1 |
11 | 5 | 59353199 | 61156570 | 4 | 1 | 6.3e-09 | 5.9e-09 | 1.6e-01 | 94 | ERCC8 |
12 | 7 | 1161158 | 2969983 | 1 | 1 | 6.1e-08 | 1.5e-08 | 1.0e-02 | 79 | MAD1L1 |
13 | 7 | 23913624 | 25432157 | 1 | 1 | 9.6e-09 | 5.5e-09 | 1.0e+00 | 100 | MPP6 |
14 | 7 | 74339397 | 75842792 | 3 | 1 | 2.2e-07 | 4.2e-07 | 2.1e-01 | 94 | POM121C |
15 | 8 | 142629143 | 144515639 | 2 | 2 | 1.7e-08 | 2.6e-09 | 4.7e-03 | 78 | THEM6 TSNARE1 |
16 | 10 | 10349662 | 12076043 | 1 | 1 | 7.6e-08 | 1.1e-08 | 7.2e-03 | 78 | CELF2 |
17 | 10 | 64195778 | 65606229 | 2 | 1 | 1.4e-08 | 8.9e-09 | 6.0e-02 | 89 | NRBF2 |
18 | 10 | 103940629 | 104440050 | 1 | 1 | 1.4e-07 | 4.9e-09 | 9.9e-03 | 81 | CUEDC2 |
19 | 11 | 94805896 | 96276010 | 4 | 1 | 2.9e-13 | 1.1e-12 | 3.8e-01 | 98 | AP001877.1 |
20 | 12 | 122713991 | 124591385 | 11 | 1 | 1.4e-14 | 7.4e-15 | 7.7e-02 | 95 | RP11-282O18.3 |
21 | 16 | 9598191 | 10524165 | 1 | 1 | 1.4e-08 | 1.3e-10 | 1.8e-03 | 76 | GRIN2A |
22 | 19 | 36003721 | 36487759 | 1 | 1 | 2.9e-07 | 3.3e-06 | 3.7e-01 | 96 | LIN37 |
23 | 19 | 45569009 | 46073472 | 1 | 1 | 3.4e-10 | 2.1e-08 | 3.7e-01 | 98 | CKM |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Cerebellar Hemisphere | 8 | 0.537 | 2.6 |
GTEx | Vagina | 1 | 0.157 | 2.6 |
GTEx | Brain Frontal Cortex BA9 | 5 | 0.541 | 2.5 |
GTEx | Esophagus Gastroesophageal Junction | 6 | 0.415 | 2.5 |
GTEx | Heart Atrial Appendage | 3 | 0.190 | 2.5 |
GTEx | Pancreas | 9 | 0.551 | 2.5 |
GTEx | Adipose Visceral Omentum | 9 | 0.442 | 2.4 |
GTEx | Brain Caudate basal ganglia | 3 | 0.326 | 2.4 |
GTEx | Brain Cerebellum | 7 | 0.353 | 2.4 |
GTEx | Brain Hypothalamus | 2 | 0.339 | 2.4 |
GTEx | Brain Putamen basal ganglia | 2 | 0.321 | 2.4 |
GTEx | Breast Mammary Tissue | 5 | 0.253 | 2.4 |
GTEx | Cells EBV-transformed lymphocytes | 3 | 0.211 | 2.4 |
GTEx | Colon Sigmoid | 6 | 0.410 | 2.4 |
GTEx | Colon Transverse | 7 | 0.339 | 2.4 |
GTEx | Esophagus Mucosa | 12 | 0.361 | 2.4 |
GTEx | Esophagus Muscularis | 13 | 0.402 | 2.4 |
GTEx | Heart Left Ventricle | 5 | 0.327 | 2.4 |
GTEx | Muscle Skeletal | 10 | 0.346 | 2.4 |
GTEx | Ovary | 1 | 0.110 | 2.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 10 | 0.407 | 2.4 |
GTEx | Small Intestine Terminal Ileum | 3 | 0.651 | 2.4 |
GTEx | Spleen | 3 | 0.213 | 2.4 |
GTEx | Stomach | 4 | 0.275 | 2.4 |
GTEx | Uterus | 0 | 0.000 | 2.4 |
GTEx | Adipose Subcutaneous | 9 | 0.258 | 2.3 |
GTEx | Artery Aorta | 10 | 0.336 | 2.3 |
GTEx | Artery Tibial | 13 | 0.346 | 2.3 |
GTEx | Brain Cortex | 3 | 0.290 | 2.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 2.3 |
GTEx | Breast Mammary Tissue (Female) | 5 | 0.304 | 2.3 |
GTEx | Cells Transformed fibroblasts | 19 | 0.452 | 2.3 |
GTEx | Liver | 4 | 0.558 | 2.3 |
GTEx | Lung | 10 | 0.348 | 2.3 |
GTEx | Nerve Tibial | 19 | 0.440 | 2.3 |
GTEx | Prostate | 1 | 0.120 | 2.3 |
GTEx | Skin Sun Exposed Lower leg | 14 | 0.385 | 2.3 |
GTEx | Thyroid | 14 | 0.350 | 2.3 |
ROSMAP | Brain Pre-frontal Cortex | 11 | 0.251 | 2.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.391 | 2.3 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 2.3 |
GTEx | Artery Coronary | 2 | 0.169 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 2.2 |
GTEx | Pituitary | 3 | 0.269 | 2.2 |
GTEx | Testis | 8 | 0.254 | 2.2 |
GTEx | Whole Blood | 4 | 0.201 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.242 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.273 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 9 | 0.439 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 6 | 0.239 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 8 | 0.482 | 2.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 5 | 0.377 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.235 | 2.2 |
GTEx | Adrenal Gland | 1 | 0.069 | 2.1 |
METSIM | Adipose | 11 | 0.239 | 2.1 |
NTR | Blood | 9 | 0.375 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 10 | 0.186 | 2.1 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 10 | 0.227 | 2.1 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.145 | 2.1 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 7 | 0.257 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 11 | 0.268 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 13 | 0.302 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.272 | 2.1 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.145 | 2.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 2.1 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 2.1 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 2.1 |
GTEx | Brain Hippocampus | 1 | 0.191 | 2.0 |
YFS | Blood | 9 | 0.195 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 0 | 0.000 | 2.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 11 | 0.238 | 2.0 |
The Cancer Genome Atlas | Thyroid Carcinoma | 16 | 0.310 | 2.0 |