TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Mouth/teeth dental problems: Bleeding gums
:
chr11:46,180,005-47,977,454
Best TWAS P=7.24e-11 · Best GWAS P=1.68e-07 conditioned to 0.929
46.5M
47M
47.5M
48M
0
2
4
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Skin Not Sun Exposed Suprapubic
C11orf49
0.09
0.00
enet
12
0.03
6.0e-03
5.2
-6.5
7.2e-11
-0.79
0.02
0.91
TRUE
5
YFS
Blood
NR1H3
0.34
0.15
enet
66
0.24
3.1e-76
-3.9
5.6
2.1e-08
0.58
0.78
0.13
FALSE
3
GTEx
Thyroid
C11orf49
0.09
0.05
lasso
3
0.04
3.0e-04
5.1
-5.2
1.8e-07
-0.99
0.02
0.98
FALSE
4
GTEx
Uterus
C11orf49
0.24
0.24
lasso
13
0.24
1.3e-05
5.2
-5.2
1.9e-07
-0.99
0.02
0.86
FALSE
2
GTEx
Spleen
LRP4
0.15
0.14
lasso
5
0.12
6.5e-04
5.1
-5.1
2.8e-07
-0.96
0.02
0.87
FALSE