Best TWAS P=1.02e-08 · Best GWAS P=1.21e-08 conditioned to 0.24
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | MAP2K5 | 0.14 | 0.18 | lasso | 4 | 0.18 | 1.0e-14 | 5.3 | -5.2 | 1.5e-07 | -0.65 | 0.06 | 0.94 | FALSE |
2 | GTEx | Adipose Visceral Omentum | MAP2K5 | 0.07 | 0.08 | lasso | 3 | 0.05 | 1.0e-03 | 5.4 | -5.4 | 8.2e-08 | -0.65 | 0.09 | 0.85 | FALSE |
3 | GTEx | Artery Tibial | MAP2K5 | 0.15 | 0.18 | lasso | 3 | 0.18 | 6.3e-14 | 5.2 | -5.3 | 8.7e-08 | -0.65 | 0.06 | 0.94 | FALSE |
4 | GTEx | Brain Cerebellum | MAP2K5 | 0.27 | 0.12 | lasso | 5 | 0.14 | 7.9e-05 | 4.2 | -5.4 | 5.3e-08 | -0.54 | 0.24 | 0.52 | FALSE |
5 | GTEx | Esophagus Muscularis | MAP2K5 | 0.24 | 0.14 | lasso | 4 | 0.13 | 2.1e-08 | 5.2 | -5.3 | 1.1e-07 | -0.65 | 0.06 | 0.94 | FALSE |
6 | GTEx | Heart Atrial Appendage | MAP2K5 | 0.16 | 0.08 | lasso | 5 | 0.16 | 1.3e-07 | 5.1 | -5.7 | 1.0e-08 | -0.80 | 0.05 | 0.95 | FALSE |
7 | GTEx | Heart Left Ventricle | MAP2K5 | 0.10 | 0.10 | lasso | 3 | 0.10 | 9.4e-06 | 5.3 | -5.3 | 1.0e-07 | -0.65 | 0.06 | 0.93 | FALSE |
8 | GTEx | Lung | MAP2K5 | 0.12 | 0.09 | enet | 11 | 0.07 | 3.6e-06 | 5.1 | -5.2 | 2.1e-07 | -0.60 | 0.06 | 0.94 | FALSE |
9 | GTEx | Muscle Skeletal | MAP2K5 | 0.08 | 0.03 | lasso | 6 | 0.05 | 1.9e-05 | -4.7 | -5.7 | 1.0e-08 | -0.91 | 0.01 | 0.99 | TRUE |
10 | GTEx | Nerve Tibial | MAP2K5 | 0.19 | 0.21 | lasso | 2 | 0.20 | 3.3e-14 | 5.2 | -5.2 | 1.9e-07 | -0.66 | 0.07 | 0.93 | FALSE |
11 | GTEx | Ovary | MAP2K5 | 0.19 | 0.24 | lasso | 3 | 0.21 | 8.3e-06 | 5.3 | -5.4 | 5.3e-08 | -0.65 | 0.08 | 0.80 | FALSE |
12 | GTEx | Skin Sun Exposed Lower leg | MAP2K5 | 0.13 | 0.06 | lasso | 4 | 0.09 | 4.4e-08 | -4.3 | -5.4 | 7.1e-08 | -0.73 | 0.23 | 0.77 | FALSE |
13 | GTEx | Thyroid | MAP2K5 | 0.11 | 0.16 | lasso | 4 | 0.15 | 9.6e-12 | 5.3 | -5.3 | 1.1e-07 | -0.68 | 0.05 | 0.94 | FALSE |
14 | YFS | Blood | MAP2K5 | 0.05 | 0.07 | lasso | 4 | 0.07 | 1.2e-21 | 5.3 | -5.2 | 2.4e-07 | -0.63 | 0.08 | 0.92 | FALSE |
15 | The Cancer Genome Atlas | Lung Adenocarcinoma | MAP2K5 | 0.04 | 0.04 | lasso | 3 | 0.03 | 8.7e-05 | 5.2 | -5.2 | 1.9e-07 | -0.66 | 0.09 | 0.89 | FALSE |
16 | The Cancer Genome Atlas | Thyroid Carcinoma | MAP2K5 | 0.10 | 0.06 | lasso | 5 | 0.04 | 6.1e-05 | 5.2 | -5.2 | 1.5e-07 | -0.64 | 0.08 | 0.91 | FALSE |