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chr18:20,082,830-21,863,589

Best TWAS P=1.82e-29 · Best GWAS P=1.1e-26 conditioned to 0.255

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	C18orf8	0.26	0.35	lasso	6	0.40	1.9e-52	-10.6	-10.9	1.4e-27	0.93	0.01	0.99	FALSE
2	CommonMind	Brain Pre-frontal Cortex	NPC1	0.08	0.07	lasso	3	0.08	5.2e-10	9.1	-9.4	6.3e-21	0.69	0.70	0.29	FALSE
3	CommonMind	Brain Pre-frontal Cortex	RIOK3	0.02	0.01	bslmm	348	0.00	1.8e-01	-5.8	-6.5	6.2e-11	0.66	0.12	0.20	FALSE
4	GTEx	Adipose Subcutaneous	TMEM241	0.07	0.00	enet	12	0.01	4.1e-02	-6.9	-6.0	1.9e-09	0.58	0.15	0.59	FALSE
5	GTEx	Adipose Subcutaneous	C18orf8	0.17	0.16	enet	13	0.16	2.6e-13	-10.4	-11.0	5.0e-28	0.96	0.02	0.98	FALSE
6	GTEx	Adipose Subcutaneous	NPC1	0.27	0.27	enet	12	0.30	2.4e-25	-10.1	-10.4	2.8e-25	0.96	0.45	0.55	FALSE
7	GTEx	Adipose Visceral Omentum	C18orf8	0.18	0.11	enet	10	0.04	4.5e-03	-10.5	-9.4	3.6e-21	0.86	0.02	0.98	FALSE
8	GTEx	Adipose Visceral Omentum	NPC1	0.20	0.19	lasso	3	0.17	2.9e-09	-10.1	-10.5	7.2e-26	0.94	0.20	0.80	FALSE
9	GTEx	Artery Tibial	C18orf8	0.18	0.12	lasso	3	0.10	1.5e-08	9.1	-9.0	1.5e-19	0.68	0.97	0.03	FALSE
10	GTEx	Artery Tibial	NPC1	0.26	0.07	enet	31	0.11	3.7e-09	9.1	-11.0	3.0e-28	0.82	0.04	0.96	FALSE
11	GTEx	Brain Caudate basal ganglia	C18orf8	0.15	0.16	enet	11	0.11	5.9e-04	-10.6	-10.9	8.5e-28	0.94	0.02	0.96	FALSE
12	GTEx	Brain Cerebellar Hemisphere	C18orf8	0.27	0.34	enet	19	0.34	1.3e-09	-10.6	-10.9	1.3e-27	0.99	0.02	0.98	FALSE
13	GTEx	Brain Cerebellum	C18orf8	0.23	0.18	enet	13	0.21	9.9e-07	-10.4	-10.4	2.2e-25	0.91	0.02	0.98	FALSE
14	GTEx	Brain Cerebellum	NPC1	0.20	0.10	enet	9	0.12	1.9e-04	-10.5	-10.2	1.3e-24	0.95	0.02	0.95	FALSE
15	GTEx	Brain Cortex	TMEM241	0.37	0.12	enet	19	0.22	1.3e-06	2.5	-6.8	8.9e-12	0.74	0.04	0.94	FALSE
16	GTEx	Brain Cortex	C18orf8	0.19	0.18	lasso	5	0.13	1.8e-04	-10.5	-10.6	4.2e-26	0.97	0.02	0.96	FALSE
17	GTEx	Brain Frontal Cortex BA9	C18orf8	0.42	0.30	enet	12	0.08	3.4e-03	-10.5	-10.1	6.6e-24	0.97	0.02	0.98	FALSE
18	GTEx	Brain Nucleus accumbens basal ganglia	TMEM241	0.17	0.02	lasso	6	-0.01	5.6e-01	-10.4	-6.9	5.3e-12	0.74	0.03	0.67	FALSE
19	GTEx	Breast Mammary Tissue	NPC1	0.27	0.13	enet	27	0.19	5.0e-10	-10.1	-10.5	6.1e-26	0.89	0.02	0.98	FALSE
20	GTEx	Breast Mammary Tissue (Male)	NPC1	0.15	0.12	lasso	7	0.16	2.0e-04	-3.5	-7.6	4.1e-14	0.54	0.04	0.58	FALSE
21	GTEx	Breast Mammary Tissue (Female)	NPC1	0.43	0.24	lasso	3	0.27	1.1e-08	-9.9	-10.3	1.0e-24	0.96	0.02	0.98	FALSE
22	GTEx	Cells Transformed fibroblasts	NPC1	0.26	0.24	lasso	8	0.24	5.7e-18	-6.9	-7.7	9.6e-15	0.71	1.00	0.00	FALSE
23	GTEx	Colon Transverse	NPC1	0.21	0.03	enet	23	0.05	3.0e-03	-6.9	-8.0	8.7e-16	0.55	0.07	0.57	FALSE
24	GTEx	Esophagus Gastroesophageal Junction	NPC1	0.19	0.13	lasso	5	0.11	1.1e-04	-6.9	-8.2	3.0e-16	0.75	0.06	0.88	FALSE
25	GTEx	Esophagus Mucosa	NPC1	0.09	0.04	lasso	3	0.05	1.5e-04	-10.1	-10.2	1.2e-24	0.96	0.02	0.96	FALSE
26	GTEx	Esophagus Muscularis	C18orf8	0.14	0.13	lasso	3	0.10	8.0e-07	9.2	-10.0	1.2e-23	0.76	0.09	0.91	FALSE
27	GTEx	Esophagus Muscularis	NPC1	0.11	0.07	enet	4	0.09	7.3e-06	-10.5	-10.8	4.9e-27	0.95	0.02	0.97	FALSE
28	GTEx	Heart Left Ventricle	NPC1	0.19	0.15	enet	12	0.17	1.6e-09	-10.5	-10.6	2.0e-26	0.96	0.02	0.98	FALSE
29	GTEx	Lung	NPC1	0.11	0.06	enet	11	0.04	2.3e-04	-10.7	-10.6	4.4e-26	0.96	0.01	0.99	FALSE
30	GTEx	Nerve Tibial	C18orf8	0.16	0.07	enet	21	0.09	3.9e-07	-9.9	-11.2	5.6e-29	0.90	0.02	0.98	FALSE
31	GTEx	Nerve Tibial	NPC1	0.19	0.12	lasso	6	0.16	1.1e-11	9.2	-10.7	6.8e-27	0.90	0.04	0.96	FALSE
32	GTEx	Pancreas	NPC1	0.33	0.14	lasso	7	0.12	1.1e-05	-10.5	-10.5	8.1e-26	0.97	0.02	0.98	FALSE
33	GTEx	Skin Not Sun Exposed Suprapubic	C18orf8	0.21	0.27	enet	6	0.23	6.9e-13	-10.5	-10.7	1.2e-26	0.99	0.02	0.98	FALSE
34	GTEx	Skin Not Sun Exposed Suprapubic	NPC1	0.15	0.08	lasso	4	0.12	2.3e-07	-10.6	-10.9	1.2e-27	0.95	0.02	0.98	FALSE
35	GTEx	Skin Sun Exposed Lower leg	C18orf8	0.35	0.33	enet	23	0.36	1.7e-30	-10.6	-10.8	4.8e-27	0.95	0.02	0.98	FALSE
36	GTEx	Skin Sun Exposed Lower leg	NPC1	0.23	0.18	lasso	3	0.27	1.8e-22	-10.1	-10.7	1.2e-26	0.91	0.17	0.83	FALSE
37	GTEx	Testis	C18orf8	0.12	0.07	lasso	6	0.08	1.9e-04	-10.6	-9.8	1.6e-22	0.93	0.02	0.92	FALSE
38	GTEx	Thyroid	NPC1	0.20	0.10	enet	25	0.13	2.3e-10	-10.5	-11.3	1.8e-29	0.91	0.02	0.98	TRUE
39	GTEx	Vagina	NPC1	0.27	0.09	lasso	7	0.14	4.9e-04	-6.4	-6.9	5.6e-12	0.59	0.11	0.58	FALSE
40	METSIM	Adipose	C18orf8	0.08	0.02	enet	23	0.04	1.0e-06	9.1	-5.6	2.6e-08	0.57	0.18	0.78	FALSE
41	METSIM	Adipose	NPC1	0.06	0.05	enet	18	0.05	6.4e-08	-10.5	-9.6	5.0e-22	0.86	0.03	0.97	FALSE
42	The Cancer Genome Atlas	Breast Invasive Carcinoma	NPC1	0.03	0.03	blup	69	0.04	2.9e-09	-10.5	-10.4	1.8e-25	0.88	0.02	0.98	FALSE
43	The Cancer Genome Atlas	Esophageal Carcinoma	NPC1	0.16	0.10	lasso	3	0.10	3.7e-04	9.1	-10.1	6.2e-24	0.79	0.05	0.64	FALSE
44	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	NPC1	0.05	0.02	blup	66	0.03	1.4e-04	-9.8	-9.3	1.1e-20	0.76	0.22	0.48	FALSE
45	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	NPC1	0.03	0.04	lasso	2	0.05	4.2e-06	-9.8	-10.5	8.1e-26	0.95	0.02	0.98	FALSE
46	The Cancer Genome Atlas	Brain Lower Grade Glioma	C18orf45	0.04	0.02	lasso	3	0.03	2.7e-04	5.9	-6.0	2.6e-09	0.59	0.01	0.98	FALSE
47	The Cancer Genome Atlas	Brain Lower Grade Glioma	C18orf8	0.07	0.05	lasso	5	0.03	9.5e-05	9.1	-9.3	1.3e-20	0.71	0.28	0.70	FALSE
48	The Cancer Genome Atlas	Brain Lower Grade Glioma	NPC1	0.07	0.08	lasso	3	0.10	1.6e-11	9.1	-10.7	1.3e-26	0.86	0.06	0.94	FALSE
49	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	NPC1	0.14	0.01	enet	14	0.08	3.3e-04	-9.8	-7.6	4.2e-14	0.69	0.03	0.77	FALSE
50	The Cancer Genome Atlas	Prostate Adenocarcinoma	NPC1	0.05	0.02	blup	65	0.03	9.9e-04	-9.8	-9.6	6.5e-22	0.75	0.03	0.65	FALSE
51	The Cancer Genome Atlas	Soft Tissue Sarcoma	C18orf45	0.08	0.06	blup	114	0.06	1.7e-04	-5.3	-6.2	6.6e-10	0.50	0.02	0.96	FALSE
52	The Cancer Genome Atlas	Stomach Adenocarcinoma	NPC1	0.06	0.01	enet	6	0.05	2.2e-04	-6.6	-6.2	5.3e-10	0.64	0.07	0.38	FALSE
53	The Cancer Genome Atlas	Thyroid Carcinoma	NPC1	0.04	0.03	blup	70	0.05	9.4e-06	-10.6	-10.4	3.3e-25	0.91	0.02	0.98	FALSE