Best TWAS P=6.09e-14 · Best GWAS P=7.98e-14 conditioned to 0.000462
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | REXO1 | 0.07 | 0.01 | bslmm | 391 | 0.01 | 1.7e-02 | -5.3 | 7.5 | 6.1e-14 | -0.51 | 0.12 | 0.57 | TRUE |
2 | GTEx | Adipose Visceral Omentum | ATP8B3 | 0.23 | 0.01 | enet | 35 | 0.12 | 6.5e-07 | -2.7 | -5.7 | 1.4e-08 | 0.22 | 0.18 | 0.08 | FALSE |
3 | GTEx | Brain Cerebellum | AC012615.1 | 0.36 | 0.11 | lasso | 4 | 0.04 | 3.3e-02 | -5.8 | -5.9 | 3.8e-09 | 0.11 | 0.07 | 0.44 | TRUE |
4 | GTEx | Esophagus Muscularis | KLF16 | 0.17 | 0.07 | enet | 9 | 0.09 | 3.7e-06 | -6.5 | -6.5 | 8.3e-11 | 0.50 | 0.20 | 0.74 | FALSE |
5 | GTEx | Esophagus Muscularis | BTBD2 | 0.17 | 0.07 | lasso | 4 | 0.09 | 4.5e-06 | -5.0 | -5.5 | 2.8e-08 | 0.05 | 0.70 | 0.04 | FALSE |
6 | GTEx | Esophagus Muscularis | CTB-31O20.6 | 0.16 | 0.07 | lasso | 5 | 0.05 | 7.8e-04 | -6.5 | -6.6 | 4.6e-11 | 0.50 | 0.21 | 0.66 | FALSE |
7 | GTEx | Heart Atrial Appendage | ATP8B3 | 0.24 | 0.12 | lasso | 3 | 0.10 | 2.3e-05 | -5.6 | -5.3 | 1.2e-07 | 0.57 | 0.14 | 0.18 | FALSE |
8 | GTEx | Lung | ATP8B3 | 0.20 | 0.07 | lasso | 7 | 0.15 | 1.8e-11 | -5.6 | -5.3 | 1.4e-07 | 0.44 | 0.82 | 0.18 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | CTB-31O20.6 | 0.15 | 0.04 | lasso | 3 | 0.01 | 7.5e-02 | -5.2 | 5.3 | 9.6e-08 | -0.04 | 0.06 | 0.14 | FALSE |
10 | GTEx | Thyroid | BTBD2 | 0.18 | 0.01 | lasso | 4 | 0.06 | 2.4e-05 | -5.7 | -5.1 | 2.8e-07 | 0.18 | 0.64 | 0.03 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | KLF16 | 0.12 | 0.08 | bslmm | 372 | 0.08 | 1.0e-10 | -7.5 | -5.9 | 3.2e-09 | 0.85 | 0.00 | 1.00 | FALSE |
12 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ATP8B3 | 0.06 | 0.00 | blup | 49 | 0.03 | 2.7e-04 | -2.1 | -6.0 | 1.4e-09 | 0.54 | 0.06 | 0.18 | FALSE |
13 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ATP8B3 | 0.04 | 0.01 | blup | 49 | 0.02 | 2.2e-03 | -7.5 | -6.7 | 2.6e-11 | 0.84 | 0.00 | 0.76 | FALSE |
14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SCAMP4 | 0.04 | 0.00 | blup | 49 | 0.01 | 9.5e-03 | -5.3 | -5.8 | 7.2e-09 | 0.41 | 0.02 | 0.10 | FALSE |