Best TWAS P=4.64e-09 · Best GWAS P=5.12e-08 conditioned to 0.0408
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | KLC1 | 0.06 | 0.02 | lasso | 2 | 0.00 | 2.2e-01 | -4.7 | 5.3 | 1.0e-07 | 0.49 | 0.10 | 0.32 | FALSE |
2 | GTEx | Adrenal Gland | KLC1 | 0.15 | 0.03 | lasso | 3 | 0.06 | 4.6e-03 | 4.4 | 5.3 | 1.1e-07 | 0.59 | 0.09 | 0.42 | FALSE |
3 | GTEx | Artery Aorta | TRMT61A | 0.14 | 0.07 | lasso | 5 | 0.12 | 6.4e-07 | -4.8 | -5.3 | 1.0e-07 | -0.29 | 0.04 | 0.95 | FALSE |
4 | GTEx | Artery Tibial | XRCC3 | 0.06 | 0.08 | lasso | 3 | 0.03 | 1.4e-03 | 4.8 | 5.4 | 6.2e-08 | 0.60 | 0.27 | 0.69 | FALSE |
5 | GTEx | Brain Cortex | XRCC3 | 0.12 | 0.02 | lasso | 4 | 0.01 | 1.7e-01 | 4.4 | 5.1 | 2.7e-07 | 0.72 | 0.06 | 0.68 | FALSE |
6 | GTEx | Brain Frontal Cortex BA9 | APOPT1 | 0.17 | 0.07 | lasso | 3 | 0.08 | 4.6e-03 | 5.4 | -5.8 | 6.9e-09 | -0.94 | 0.03 | 0.83 | FALSE |
7 | GTEx | Breast Mammary Tissue | KLC1 | 0.12 | 0.02 | enet | 26 | 0.07 | 2.9e-04 | 4.4 | 5.4 | 8.5e-08 | 0.66 | 0.28 | 0.66 | FALSE |
8 | GTEx | Lung | CKB | 0.07 | 0.01 | lasso | 2 | 0.01 | 3.4e-02 | -4.7 | -5.2 | 2.0e-07 | -0.54 | 0.16 | 0.53 | FALSE |
9 | GTEx | Muscle Skeletal | KLC1 | 0.11 | 0.07 | lasso | 7 | 0.08 | 3.3e-08 | -4.5 | 5.2 | 2.6e-07 | 0.57 | 0.43 | 0.55 | FALSE |
10 | GTEx | Nerve Tibial | KLC1 | 0.07 | 0.00 | enet | 22 | 0.01 | 8.5e-02 | 4.5 | 5.3 | 1.4e-07 | 0.63 | 0.10 | 0.69 | FALSE |
11 | GTEx | Spleen | KLC1 | 0.15 | 0.05 | lasso | 3 | 0.03 | 6.4e-02 | 5.4 | 5.8 | 7.3e-09 | 0.92 | 0.04 | 0.62 | FALSE |
12 | The Cancer Genome Atlas | Glioblastoma Multiforme | MARK3 | 0.12 | 0.05 | blup | 64 | 0.07 | 3.3e-03 | -4.7 | -5.7 | 1.2e-08 | -0.63 | 0.02 | 0.26 | FALSE |
13 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C14orf153 | 0.04 | 0.01 | blup | 38 | 0.03 | 6.2e-04 | 3.7 | -5.6 | 2.6e-08 | -0.71 | 0.05 | 0.34 | FALSE |
14 | The Cancer Genome Atlas | Lung Adenocarcinoma | C14orf153 | 0.06 | 0.02 | blup | 38 | 0.04 | 2.4e-05 | -4.5 | -5.9 | 4.6e-09 | -0.67 | 0.08 | 0.60 | TRUE |
15 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C14orf153 | 0.09 | 0.08 | blup | 38 | 0.09 | 6.2e-10 | -4.4 | -5.6 | 1.8e-08 | -0.62 | 0.12 | 0.84 | FALSE |
16 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CKB | 0.07 | 0.09 | blup | 32 | 0.10 | 1.1e-10 | 5.4 | -5.6 | 2.0e-08 | -0.91 | 0.01 | 0.99 | FALSE |
17 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C14orf153 | 0.20 | 0.05 | lasso | 2 | 0.04 | 8.8e-04 | 5.4 | -5.7 | 1.4e-08 | -0.97 | 0.00 | 0.97 | FALSE |
18 | The Cancer Genome Atlas | Thyroid Carcinoma | KLC1 | 0.04 | 0.01 | blup | 82 | 0.03 | 5.4e-04 | 3.8 | 5.5 | 3.4e-08 | 0.65 | 0.04 | 0.68 | FALSE |