Best TWAS P=7.65e-10 · Best GWAS P=2.76e-10 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | USP36 | 0.14 | 0.13 | lasso | 3 | 0.13 | 1.7e-15 | 5.7 | -6.0 | 1.8e-09 | -0.96 | 0.04 | 0.96 | FALSE |
2 | GTEx | Adipose Subcutaneous | CYTH1 | 0.13 | 0.03 | lasso | 5 | 0.04 | 5.7e-04 | 6.2 | 5.2 | 1.9e-07 | 0.83 | 0.04 | 0.83 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | USP36 | 0.50 | 0.16 | enet | 20 | 0.07 | 5.7e-03 | 5.9 | -5.3 | 1.2e-07 | -0.81 | 0.05 | 0.89 | FALSE |
4 | GTEx | Brain Cerebellum | USP36 | 0.31 | 0.20 | enet | 18 | 0.13 | 9.7e-05 | 5.9 | -5.5 | 4.5e-08 | -0.79 | 0.05 | 0.87 | FALSE |
5 | GTEx | Brain Nucleus accumbens basal ganglia | USP36 | 0.36 | 0.23 | lasso | 5 | 0.20 | 4.8e-06 | 5.9 | -6.2 | 7.7e-10 | -0.97 | 0.04 | 0.94 | TRUE |
6 | GTEx | Esophagus Mucosa | USP36 | 0.11 | 0.04 | enet | 13 | 0.06 | 1.1e-04 | 6.3 | -5.9 | 3.4e-09 | -0.87 | 0.02 | 0.97 | FALSE |
7 | GTEx | Muscle Skeletal | CYTH1 | 0.13 | 0.12 | lasso | 3 | 0.13 | 2.5e-12 | 6.2 | 6.0 | 2.7e-09 | 0.91 | 0.03 | 0.97 | FALSE |
8 | GTEx | Testis | USP36 | 0.32 | 0.24 | lasso | 6 | 0.26 | 6.2e-12 | 5.1 | -5.8 | 5.2e-09 | -0.92 | 0.04 | 0.96 | FALSE |
9 | GTEx | Thyroid | CYTH1 | 0.24 | 0.07 | lasso | 11 | 0.06 | 3.4e-05 | 5.9 | 5.2 | 2.3e-07 | 0.84 | 0.04 | 0.96 | FALSE |