TWAS
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Cardiovascular Disease
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chr10:18,221,643-19,601,824
Best TWAS P=1.14e-14 · Best GWAS P=3.33e-16 conditioned to 1.84e-11
18.2M
18.4M
18.6M
18.8M
19M
19.2M
19.4M
19.6M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
CACNB2
0.05
0.05
enet
4
0.04
8.8e-06
6.7
7.7
1.1e-14
-0.11
0.26
0.73
TRUE
3
GTEx
Nerve Tibial
NSUN6
0.37
0.35
enet
36
0.36
1.7e-26
-4.4
5.6
2.6e-08
-0.12
1.00
0.00
TRUE
1
GTEx
Artery Tibial
NSUN6
0.18
0.11
lasso
8
0.10
4.9e-08
-3.5
5.8
4.9e-09
-0.25
1.00
0.00
FALSE
2
GTEx
Brain Cerebellar Hemisphere
RP11-499P20.2
0.38
-0.01
enet
32
0.01
1.6e-01
1.5
5.4
5.6e-08
-0.20
0.11
0.07
FALSE
4
GTEx
Whole Blood
NSUN6
0.06
0.04
lasso
2
0.04
2.4e-04
-4.4
5.2
2.3e-07
-0.19
0.62
0.02
FALSE