Best TWAS P=1.7e-60 · Best GWAS P=6.21e-59 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AKR1C1 | 0.30 | 0.16 | bslmm | 703 | 0.18 | 3.5e-21 | 4.45 | 8.6 | 8.9e-18 | -0.55 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | AKR1C2 | 0.31 | 0.06 | bslmm | 665 | 0.16 | 2.1e-19 | 1.40 | -11.2 | 4.2e-29 | 0.74 | 0.09 | 0.91 | FALSE |
3 | GTEx | Adipose Subcutaneous | GDI2 | 0.28 | 0.16 | enet | 12 | 0.16 | 3.1e-13 | -5.54 | 5.6 | 2.2e-08 | 0.01 | 0.06 | 0.94 | FALSE |
4 | GTEx | Adipose Visceral Omentum | GDI2 | 0.16 | 0.11 | lasso | 4 | 0.11 | 3.9e-06 | -6.05 | 6.3 | 2.5e-10 | 0.01 | 0.03 | 0.97 | TRUE |
5 | GTEx | Adrenal Gland | AKR1C1 | 0.33 | 0.08 | enet | 11 | 0.07 | 1.8e-03 | 5.68 | -6.6 | 4.1e-11 | 0.42 | 0.49 | 0.04 | FALSE |
6 | GTEx | Artery Aorta | GDI2 | 0.23 | 0.13 | lasso | 5 | 0.12 | 6.1e-07 | -6.05 | 6.2 | 5.0e-10 | 0.04 | 0.04 | 0.95 | FALSE |
7 | GTEx | Artery Tibial | GDI2 | 0.32 | 0.20 | lasso | 6 | 0.19 | 6.6e-15 | -5.39 | 5.3 | 1.4e-07 | 0.03 | 0.23 | 0.77 | FALSE |
8 | GTEx | Artery Tibial | AKR1C2 | 0.14 | 0.10 | enet | 10 | 0.15 | 1.2e-11 | -16.06 | -14.7 | 6.1e-49 | 0.94 | 0.00 | 1.00 | FALSE |
9 | GTEx | Brain Cerebellar Hemisphere | AKR1C1 | 0.46 | 0.14 | lasso | 4 | 0.23 | 1.4e-06 | -5.90 | 12.3 | 5.6e-35 | -0.85 | 0.01 | 0.96 | FALSE |
10 | GTEx | Brain Cerebellum | GDI2 | 0.31 | 0.14 | lasso | 4 | 0.09 | 1.4e-03 | -6.05 | 5.6 | 1.8e-08 | 0.02 | 0.05 | 0.85 | FALSE |
11 | GTEx | Brain Cerebellum | AKR1C2 | 0.27 | 0.04 | enet | 12 | 0.11 | 4.1e-04 | -16.18 | -8.9 | 5.4e-19 | 0.68 | 0.01 | 0.97 | FALSE |
12 | GTEx | Brain Cortex | AKR1C2 | 0.49 | 0.10 | lasso | 11 | 0.26 | 1.1e-07 | -16.19 | -13.4 | 1.1e-40 | 0.85 | 0.01 | 0.98 | FALSE |
13 | GTEx | Brain Hippocampus | AKR1C2 | 0.35 | 0.13 | lasso | 9 | 0.16 | 1.3e-04 | -7.71 | -6.8 | 1.2e-11 | 0.49 | 0.07 | 0.78 | FALSE |
14 | GTEx | Breast Mammary Tissue | GDI2 | 0.21 | 0.14 | lasso | 2 | 0.12 | 6.9e-07 | -6.05 | 6.0 | 2.0e-09 | 0.03 | 0.05 | 0.95 | FALSE |
15 | GTEx | Breast Mammary Tissue (Female) | GDI2 | 0.26 | 0.02 | lasso | 2 | 0.05 | 1.7e-02 | -6.05 | 6.1 | 1.3e-09 | 0.03 | 0.04 | 0.70 | FALSE |
16 | GTEx | Cells Transformed fibroblasts | AKR1C2 | 0.28 | 0.23 | lasso | 6 | 0.21 | 1.9e-15 | -16.19 | -16.4 | 1.7e-60 | 1.00 | 0.00 | 1.00 | TRUE |
17 | GTEx | Esophagus Muscularis | GDI2 | 0.18 | 0.10 | lasso | 6 | 0.12 | 5.5e-08 | -5.05 | 6.0 | 1.9e-09 | 0.01 | 0.08 | 0.92 | FALSE |
18 | GTEx | Esophagus Muscularis | AKR1C2 | 0.30 | 0.21 | lasso | 2 | 0.19 | 8.5e-12 | -16.19 | -16.2 | 4.4e-59 | 1.00 | 0.00 | 1.00 | FALSE |
19 | GTEx | Heart Atrial Appendage | AKR1C2 | 0.28 | 0.37 | lasso | 3 | 0.29 | 1.2e-13 | -16.06 | -16.1 | 3.5e-58 | 0.98 | 0.00 | 1.00 | FALSE |
20 | GTEx | Lung | GDI2 | 0.19 | 0.10 | lasso | 4 | 0.09 | 2.8e-07 | -5.39 | 5.3 | 8.9e-08 | 0.02 | 0.07 | 0.93 | FALSE |
21 | GTEx | Muscle Skeletal | AKR1C2 | 0.11 | 0.03 | enet | 9 | 0.05 | 2.0e-05 | -2.14 | 8.5 | 1.9e-17 | -0.55 | 0.06 | 0.83 | FALSE |
22 | GTEx | Muscle Skeletal | AKR1E2 | 0.12 | 0.02 | lasso | 4 | 0.01 | 2.2e-02 | -5.66 | 6.0 | 2.4e-09 | -0.42 | 0.16 | 0.07 | FALSE |
23 | GTEx | Nerve Tibial | GDI2 | 0.14 | 0.08 | lasso | 5 | 0.08 | 3.1e-06 | -5.39 | 5.9 | 3.4e-09 | 0.02 | 0.05 | 0.95 | FALSE |
24 | GTEx | Ovary | AKR1C3 | 0.35 | 0.20 | lasso | 9 | 0.22 | 3.9e-06 | -16.19 | -14.9 | 3.2e-50 | 0.91 | 0.00 | 0.97 | FALSE |
25 | GTEx | Pancreas | GDI2 | 0.30 | 0.23 | lasso | 4 | 0.20 | 4.9e-09 | -6.05 | 6.1 | 1.3e-09 | 0.03 | 0.03 | 0.97 | FALSE |
26 | GTEx | Skin Not Sun Exposed Suprapubic | GDI2 | 0.15 | 0.10 | lasso | 2 | 0.08 | 5.6e-05 | -5.54 | 5.5 | 3.3e-08 | 0.01 | 0.07 | 0.92 | FALSE |
27 | GTEx | Skin Sun Exposed Lower leg | AKR1C2 | 0.17 | 0.18 | lasso | 2 | 0.18 | 4.0e-15 | -16.18 | -16.2 | 6.6e-59 | 1.00 | 0.00 | 1.00 | FALSE |
28 | GTEx | Testis | AKR1C2 | 0.44 | 0.36 | lasso | 4 | 0.36 | 8.5e-17 | -16.19 | -16.0 | 1.3e-57 | 1.00 | 0.00 | 1.00 | FALSE |
29 | GTEx | Testis | AKR1C1 | 0.28 | 0.04 | enet | 39 | 0.07 | 3.7e-04 | -16.02 | 11.1 | 1.2e-28 | -0.62 | 0.01 | 0.94 | FALSE |
30 | GTEx | Thyroid | GDI2 | 0.12 | 0.11 | lasso | 2 | 0.11 | 1.5e-08 | -6.05 | 6.1 | 1.1e-09 | 0.03 | 0.02 | 0.98 | FALSE |
31 | METSIM | Adipose | AKR1C2 | 0.06 | 0.00 | blup | 656 | 0.02 | 1.3e-03 | 3.43 | -6.2 | 7.4e-10 | 0.30 | 0.11 | 0.14 | FALSE |
32 | NTR | Blood | GDI2 | 0.04 | 0.02 | lasso | 3 | 0.02 | 1.6e-07 | -6.05 | 5.9 | 3.7e-09 | 0.03 | 0.03 | 0.97 | FALSE |
33 | ROSMAP | Brain Pre-frontal Cortex | AKR1C2 | 0.56 | 0.40 | enet | 28 | 0.46 | 1.0e-65 | -16.19 | -14.9 | 4.8e-50 | 0.93 | 0.00 | 1.00 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | AKR1C1 | 0.39 | 0.28 | lasso | 6 | 0.32 | 9.1e-42 | 4.55 | 9.0 | 1.9e-19 | -0.61 | 1.00 | 0.00 | FALSE |
35 | ROSMAP | Brain Pre-frontal Cortex | ASB13 | 0.38 | 0.33 | enet | 21 | 0.40 | 3.4e-54 | 3.11 | -5.2 | 2.4e-07 | -0.05 | 1.00 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AKR1C1 | 0.01 | 0.00 | blup | 81 | 0.01 | 7.5e-03 | 5.83 | -7.1 | 9.9e-13 | 0.43 | 0.03 | 0.39 | FALSE |
37 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GDI2 | 0.03 | 0.01 | blup | 59 | 0.02 | 4.8e-05 | -5.72 | 6.2 | 4.4e-10 | 0.02 | 0.01 | 0.98 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKR1C1 | 0.07 | 0.04 | enet | 10 | 0.02 | 1.0e-03 | -16.02 | 14.9 | 5.5e-50 | -0.88 | 0.00 | 0.99 | FALSE |
39 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKR1C2 | 0.12 | 0.11 | lasso | 6 | 0.09 | 1.6e-10 | -16.19 | -16.2 | 8.8e-59 | 1.00 | 0.00 | 1.00 | FALSE |
40 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AKR1E2 | 0.07 | 0.02 | blup | 146 | 0.05 | 2.3e-06 | 0.96 | 6.3 | 2.4e-10 | -0.47 | 0.79 | 0.12 | FALSE |
41 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1C1 | 0.15 | 0.02 | blup | 81 | 0.06 | 2.0e-04 | 4.55 | 9.6 | 1.4e-21 | -0.59 | 0.00 | 0.86 | FALSE |
42 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1C2 | 0.29 | 0.21 | lasso | 1 | 0.21 | 4.7e-12 | -16.06 | -16.1 | 4.8e-58 | 0.98 | 0.01 | 0.99 | FALSE |
43 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AKR1C2 | 0.09 | 0.05 | blup | 62 | 0.05 | 3.4e-06 | -16.02 | -14.3 | 2.3e-46 | 0.89 | 0.00 | 1.00 | FALSE |
44 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AKR1C2 | 0.39 | 0.18 | enet | 14 | 0.23 | 2.5e-23 | -16.19 | -14.4 | 8.3e-47 | 0.85 | 0.00 | 1.00 | FALSE |
45 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AKR1E2 | 0.07 | 0.01 | lasso | 4 | 0.04 | 6.3e-05 | 1.82 | 5.7 | 1.3e-08 | -0.34 | 0.35 | 0.05 | FALSE |
46 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GDI2 | 0.12 | 0.10 | lasso | 2 | 0.09 | 7.5e-10 | -5.39 | 5.5 | 3.9e-08 | 0.03 | 0.01 | 0.99 | FALSE |
47 | The Cancer Genome Atlas | Soft Tissue Sarcoma | AKR1C2 | 0.07 | 0.04 | enet | 5 | 0.06 | 1.1e-04 | -5.90 | -11.2 | 2.7e-29 | 0.74 | 0.02 | 0.78 | FALSE |
48 | The Cancer Genome Atlas | Thyroid Carcinoma | AKR1C1 | 0.13 | 0.13 | lasso | 6 | 0.13 | 2.0e-12 | 5.71 | -5.8 | 7.5e-09 | 0.34 | 1.00 | 0.00 | FALSE |
49 | The Cancer Genome Atlas | Thyroid Carcinoma | AKR1C2 | 0.09 | 0.08 | lasso | 3 | 0.08 | 7.2e-08 | -16.02 | -15.3 | 1.2e-52 | 0.90 | 0.00 | 1.00 | FALSE |
50 | The Cancer Genome Atlas | Thyroid Carcinoma | ASB13 | 0.06 | 0.02 | lasso | 5 | 0.02 | 6.0e-03 | 5.79 | -6.4 | 1.2e-10 | -0.09 | 0.08 | 0.52 | TRUE |
51 | The Cancer Genome Atlas | Thyroid Carcinoma | GDI2 | 0.07 | 0.06 | enet | 8 | 0.06 | 1.1e-06 | -6.05 | 6.0 | 2.5e-09 | 0.03 | 0.00 | 1.00 | FALSE |