Best TWAS P=2.06e-10 · Best GWAS P=1.1e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Cells Transformed fibroblasts | IAH1 | 0.09 | 0.10 | lasso | 4 | 0.07 | 3.7e-06 | -5.2 | -5.2 | 2.0e-07 | 0.83 | 0.25 | 0.73 | FALSE |
2 | GTEx | Muscle Skeletal | ADAM17 | 0.07 | 0.07 | enet | 5 | 0.05 | 4.5e-06 | -6.0 | -6.4 | 2.1e-10 | 0.95 | 0.00 | 1.00 | TRUE |
3 | GTEx | Muscle Skeletal | RP11-400L8.2 | 0.11 | 0.11 | lasso | 7 | 0.11 | 7.9e-11 | -5.2 | 5.2 | 2.2e-07 | -0.83 | 0.24 | 0.75 | FALSE |
4 | GTEx | Nerve Tibial | ADAM17 | 0.10 | 0.02 | enet | 8 | 0.01 | 3.9e-02 | -5.2 | 5.4 | 6.8e-08 | -0.87 | 0.04 | 0.94 | FALSE |
5 | GTEx | Testis | IAH1 | 0.30 | 0.07 | lasso | 6 | 0.09 | 5.8e-05 | -5.2 | -5.3 | 9.3e-08 | 0.81 | 0.18 | 0.71 | FALSE |
6 | NTR | Blood | ADAM17 | 0.03 | 0.03 | lasso | 8 | 0.03 | 2.1e-09 | -5.2 | 5.5 | 4.7e-08 | -0.84 | 0.22 | 0.78 | FALSE |
7 | ROSMAP | Brain Pre-frontal Cortex | IAH1 | 0.08 | 0.07 | lasso | 5 | 0.07 | 8.8e-09 | -5.3 | -5.3 | 9.2e-08 | 0.79 | 0.26 | 0.74 | FALSE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ADAM17 | 0.03 | 0.02 | blup | 41 | 0.03 | 1.8e-06 | -5.1 | -5.9 | 3.6e-09 | 0.80 | 0.18 | 0.80 | FALSE |
9 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IAH1 | 0.03 | 0.01 | blup | 35 | 0.02 | 1.7e-03 | -5.2 | -5.4 | 6.7e-08 | 0.77 | 0.04 | 0.60 | FALSE |
10 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADAM17 | 0.03 | 0.01 | blup | 41 | 0.02 | 4.7e-03 | -5.2 | -5.6 | 2.2e-08 | 0.85 | 0.04 | 0.64 | FALSE |
11 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ADAM17 | 0.10 | 0.14 | lasso | 2 | 0.13 | 3.2e-05 | -5.9 | -5.9 | 3.4e-09 | 0.97 | 0.01 | 0.98 | FALSE |