Best TWAS P=4.17e-16 · Best GWAS P=2.69e-16 conditioned to 0.129
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | TCEA2 | 0.11 | 0.06 | lasso | 2 | 0.03 | 9.4e-04 | 4.9 | 5.1 | 2.8e-07 | 0.56 | 0.36 | 0.08 | FALSE |
2 | GTEx | Adrenal Gland | OPRL1 | 0.48 | 0.29 | enet | 21 | 0.22 | 1.5e-08 | -7.0 | -7.8 | 6.7e-15 | -0.78 | 0.06 | 0.94 | FALSE |
3 | GTEx | Adrenal Gland | RGS19 | 0.32 | 0.20 | lasso | 8 | 0.21 | 5.8e-08 | -7.0 | -6.3 | 3.4e-10 | -0.79 | 0.15 | 0.68 | FALSE |
4 | GTEx | Artery Aorta | OPRL1 | 0.27 | 0.19 | lasso | 4 | 0.17 | 1.4e-09 | -7.0 | -7.0 | 1.8e-12 | -0.80 | 0.34 | 0.66 | FALSE |
5 | GTEx | Artery Aorta | TCEA2 | 0.09 | 0.04 | lasso | 3 | 0.03 | 1.3e-02 | -7.0 | 6.7 | 2.3e-11 | 0.76 | 0.01 | 0.98 | FALSE |
6 | GTEx | Artery Tibial | OPRL1 | 0.10 | 0.10 | lasso | 2 | 0.06 | 1.1e-05 | -7.0 | -7.3 | 2.3e-13 | -0.88 | 0.06 | 0.94 | FALSE |
7 | GTEx | Artery Tibial | RGS19 | 0.12 | 0.07 | lasso | 2 | 0.07 | 2.8e-06 | 7.6 | -7.6 | 3.5e-14 | -0.95 | 0.04 | 0.96 | FALSE |
8 | GTEx | Brain Cerebellar Hemisphere | OPRL1 | 0.27 | 0.14 | lasso | 7 | 0.17 | 4.4e-05 | -7.0 | -6.7 | 1.8e-11 | -0.77 | 0.02 | 0.75 | FALSE |
9 | GTEx | Brain Cerebellum | RGS19 | 0.28 | 0.22 | lasso | 4 | 0.18 | 7.2e-06 | -7.0 | -6.9 | 5.4e-12 | -0.81 | 0.02 | 0.90 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | OPRL1 | 0.25 | 0.07 | enet | 13 | 0.12 | 5.5e-09 | 5.4 | -6.7 | 1.7e-11 | -0.72 | 0.50 | 0.50 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | RGS19 | 0.37 | 0.28 | lasso | 8 | 0.29 | 3.2e-22 | 7.6 | -7.7 | 1.2e-14 | -0.93 | 0.01 | 0.99 | FALSE |
12 | GTEx | Colon Sigmoid | RGS19 | 0.27 | 0.07 | enet | 33 | 0.09 | 3.8e-04 | -5.5 | -5.3 | 9.7e-08 | -0.61 | 0.04 | 0.93 | FALSE |
13 | GTEx | Esophagus Mucosa | RGS19 | 0.43 | 0.28 | enet | 17 | 0.34 | 7.9e-24 | -7.0 | -7.7 | 1.3e-14 | -0.91 | 0.00 | 1.00 | FALSE |
14 | GTEx | Esophagus Muscularis | OPRL1 | 0.17 | 0.14 | lasso | 1 | 0.13 | 4.7e-08 | -7.0 | -7.0 | 1.9e-12 | -0.84 | 0.08 | 0.92 | FALSE |
15 | GTEx | Esophagus Muscularis | RGS19 | 0.22 | 0.10 | lasso | 4 | 0.10 | 1.6e-06 | -7.0 | -6.9 | 5.2e-12 | -0.80 | 0.18 | 0.81 | FALSE |
16 | GTEx | Muscle Skeletal | RGS19 | 0.26 | 0.16 | lasso | 4 | 0.16 | 5.1e-15 | 7.6 | -7.2 | 6.0e-13 | -0.94 | 0.07 | 0.93 | FALSE |
17 | GTEx | Nerve Tibial | OPRL1 | 0.20 | 0.15 | lasso | 3 | 0.14 | 3.3e-10 | -7.0 | -6.8 | 1.2e-11 | -0.82 | 0.44 | 0.56 | FALSE |
18 | GTEx | Pancreas | OPRL1 | 0.39 | 0.27 | lasso | 5 | 0.32 | 6.9e-14 | -7.0 | -7.4 | 1.0e-13 | -0.90 | 0.05 | 0.95 | FALSE |
19 | GTEx | Skin Not Sun Exposed Suprapubic | RGS19 | 0.51 | 0.28 | enet | 28 | 0.32 | 4.3e-18 | -7.0 | -7.2 | 8.7e-13 | -0.80 | 0.01 | 0.99 | FALSE |
20 | GTEx | Skin Sun Exposed Lower leg | OPRL1 | 0.14 | 0.10 | lasso | 6 | 0.11 | 4.4e-09 | 7.6 | -8.0 | 1.3e-15 | -0.93 | 0.01 | 0.99 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | RGS19 | 0.42 | 0.26 | lasso | 6 | 0.33 | 4.6e-28 | -7.0 | -8.1 | 4.2e-16 | -0.95 | 0.00 | 1.00 | TRUE |
22 | GTEx | Stomach | OPRL1 | 0.36 | 0.23 | enet | 16 | 0.19 | 1.3e-09 | -7.0 | -7.1 | 9.7e-13 | -0.75 | 0.30 | 0.70 | FALSE |
23 | GTEx | Stomach | RGS19 | 0.18 | 0.25 | lasso | 2 | 0.25 | 2.2e-12 | -7.0 | -7.1 | 1.4e-12 | -0.84 | 0.79 | 0.20 | FALSE |
24 | GTEx | Thyroid | RGS19 | 0.23 | 0.14 | enet | 11 | 0.19 | 3.3e-14 | 7.6 | -7.3 | 2.1e-13 | -0.92 | 0.00 | 1.00 | FALSE |
25 | GTEx | Vagina | RGS19 | 0.39 | 0.08 | lasso | 8 | 0.03 | 7.5e-02 | 7.6 | -7.0 | 3.2e-12 | -0.91 | 0.01 | 0.84 | FALSE |
26 | GTEx | Whole Blood | OPRL1 | 0.09 | 0.06 | enet | 8 | 0.07 | 4.3e-07 | 8.2 | 7.9 | 2.6e-15 | 0.92 | 0.00 | 1.00 | FALSE |
27 | NTR | Blood | OPRL1 | 0.07 | 0.02 | bslmm | 309 | 0.03 | 8.5e-10 | 8.2 | 5.2 | 1.5e-07 | 0.53 | 0.00 | 1.00 | FALSE |
28 | ROSMAP | Brain Pre-frontal Cortex | C20orf201 | 0.10 | 0.09 | enet | 9 | 0.10 | 9.9e-13 | -5.3 | 6.6 | 5.7e-11 | 0.68 | 0.23 | 0.77 | FALSE |
29 | YFS | Blood | OPRL1 | 0.07 | 0.07 | lasso | 5 | 0.09 | 5.0e-27 | -7.0 | 7.3 | 2.9e-13 | 0.82 | 0.38 | 0.62 | FALSE |
30 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | RGS19 | 0.04 | 0.04 | blup | 48 | 0.03 | 1.1e-03 | -7.0 | -6.3 | 3.9e-10 | -0.71 | 0.01 | 0.85 | FALSE |
31 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C20orf201 | 0.03 | 0.01 | lasso | 4 | 0.01 | 2.3e-03 | -5.3 | 5.2 | 1.9e-07 | 0.61 | 0.31 | 0.17 | FALSE |
32 | The Cancer Genome Atlas | Colon Adenocarcinoma | RGS19 | 0.09 | 0.04 | enet | 4 | 0.04 | 2.8e-03 | -5.1 | -5.4 | 8.3e-08 | -0.59 | 0.06 | 0.75 | FALSE |
33 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RGS19 | 0.06 | 0.06 | blup | 47 | 0.05 | 1.4e-06 | -7.0 | -6.6 | 5.2e-11 | -0.80 | 0.00 | 1.00 | FALSE |
34 | The Cancer Genome Atlas | Brain Lower Grade Glioma | OPRL1 | 0.03 | 0.02 | lasso | 1 | 0.01 | 3.5e-02 | -7.0 | -7.0 | 1.9e-12 | -0.84 | 0.01 | 0.85 | FALSE |
35 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | RGS19 | 0.05 | 0.02 | blup | 48 | 0.02 | 1.1e-03 | 4.4 | -7.2 | 4.6e-13 | -0.75 | 0.01 | 0.97 | FALSE |
36 | The Cancer Genome Atlas | Prostate Adenocarcinoma | OPRL1 | 0.07 | 0.08 | lasso | 4 | 0.08 | 7.8e-09 | -5.3 | -6.0 | 2.6e-09 | -0.68 | 0.80 | 0.19 | FALSE |
37 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RGS19 | 0.07 | 0.05 | blup | 48 | 0.07 | 1.1e-07 | -5.3 | -6.5 | 6.3e-11 | -0.79 | 0.04 | 0.96 | FALSE |
38 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RGS19 | 0.18 | 0.08 | enet | 10 | 0.07 | 2.2e-03 | 4.4 | -5.8 | 6.8e-09 | -0.61 | 0.13 | 0.26 | FALSE |