Best TWAS P=1.17e-11 · Best GWAS P=2.08e-08 conditioned to 0.0203
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adrenal Gland | MTFR1L | 0.22 | 0.09 | enet | 16 | 0.10 | 1.9e-04 | -3.9 | -5.6 | 2.2e-08 | 0.69 | 0.22 | 0.74 | FALSE |
2 | GTEx | Brain Cerebellum | SEPN1 | 0.36 | 0.23 | lasso | 12 | 0.26 | 3.3e-08 | -4.3 | -5.3 | 9.3e-08 | 0.62 | 0.23 | 0.70 | FALSE |
3 | GTEx | Breast Mammary Tissue | MTFR1L | 0.12 | 0.07 | enet | 14 | 0.04 | 3.0e-03 | -5.3 | 6.2 | 5.3e-10 | -0.88 | 0.03 | 0.95 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | RP1-125I3.2 | 0.06 | 0.04 | enet | 19 | 0.03 | 3.3e-03 | -3.9 | 6.8 | 1.2e-11 | -0.54 | 0.06 | 0.58 | TRUE |
5 | GTEx | Colon Transverse | RP1-317E23.7 | 0.23 | 0.29 | enet | 15 | 0.32 | 1.0e-15 | -5.3 | 5.3 | 1.4e-07 | -0.96 | 0.02 | 0.98 | FALSE |
6 | GTEx | Esophagus Gastroesophageal Junction | MTFR1L | 0.09 | 0.13 | lasso | 3 | 0.11 | 1.2e-04 | -5.4 | 5.2 | 2.1e-07 | -0.90 | 0.03 | 0.93 | FALSE |
7 | GTEx | Esophagus Mucosa | MTFR1L | 0.25 | 0.17 | enet | 16 | 0.15 | 3.3e-10 | -5.5 | 5.7 | 9.6e-09 | -0.98 | 0.01 | 0.99 | FALSE |
8 | GTEx | Esophagus Mucosa | RP1-317E23.7 | 0.21 | 0.20 | enet | 11 | 0.17 | 3.3e-11 | -5.5 | 5.1 | 3.1e-07 | -0.94 | 0.02 | 0.98 | FALSE |
9 | GTEx | Heart Atrial Appendage | MTFR1L | 0.20 | 0.28 | enet | 15 | 0.24 | 4.3e-11 | -5.6 | 5.2 | 2.2e-07 | -0.95 | 0.01 | 0.99 | FALSE |
10 | GTEx | Heart Atrial Appendage | RP1-317E23.7 | 0.23 | 0.31 | enet | 15 | 0.25 | 1.6e-11 | -5.6 | 5.4 | 6.3e-08 | -0.96 | 0.01 | 0.99 | FALSE |
11 | GTEx | Heart Left Ventricle | MTFR1L | 0.41 | 0.37 | enet | 16 | 0.39 | 6.9e-22 | -5.5 | 5.5 | 3.5e-08 | -0.98 | 0.01 | 0.99 | FALSE |
12 | GTEx | Heart Left Ventricle | RP1-317E23.7 | 0.32 | 0.29 | enet | 13 | 0.29 | 7.8e-16 | -5.5 | 5.6 | 2.5e-08 | -0.98 | 0.01 | 0.99 | FALSE |
13 | GTEx | Muscle Skeletal | MTFR1L | 0.25 | 0.28 | lasso | 9 | 0.31 | 1.3e-30 | -5.5 | 5.4 | 6.6e-08 | -0.98 | 0.01 | 0.99 | FALSE |
14 | GTEx | Muscle Skeletal | RP1-317E23.7 | 0.22 | 0.22 | lasso | 10 | 0.26 | 3.9e-25 | -5.5 | 5.2 | 2.5e-07 | -0.96 | 0.01 | 0.99 | FALSE |
15 | GTEx | Skin Not Sun Exposed Suprapubic | CNKSR1 | 0.15 | 0.10 | lasso | 7 | 0.09 | 1.0e-05 | -4.6 | 5.2 | 2.3e-07 | -0.10 | 0.49 | 0.47 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | MTFR1L | 0.12 | 0.05 | enet | 24 | 0.05 | 3.8e-05 | -5.6 | 5.6 | 1.8e-08 | -0.79 | 0.02 | 0.98 | FALSE |
17 | GTEx | Stomach | MTFR1L | 0.14 | 0.00 | enet | 17 | 0.01 | 1.5e-01 | -3.2 | 5.5 | 3.6e-08 | -0.30 | 0.06 | 0.24 | FALSE |
18 | GTEx | Thyroid | MTFR1L | 0.28 | 0.21 | enet | 19 | 0.23 | 1.3e-17 | -5.5 | 5.3 | 1.0e-07 | -0.98 | 0.01 | 0.98 | FALSE |
19 | GTEx | Thyroid | RP1-317E23.7 | 0.23 | 0.25 | lasso | 4 | 0.22 | 1.0e-16 | -5.5 | 5.4 | 7.8e-08 | -0.98 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Colon Adenocarcinoma | LOC646471 | 0.09 | 0.12 | lasso | 4 | 0.11 | 1.0e-06 | -5.6 | 5.6 | 2.7e-08 | -0.98 | 0.01 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Esophageal Carcinoma | LOC646471 | 0.13 | 0.09 | enet | 6 | 0.11 | 2.2e-04 | -5.5 | 5.6 | 1.8e-08 | -0.90 | 0.01 | 0.97 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC646471 | 0.10 | 0.11 | blup | 60 | 0.10 | 1.6e-11 | -5.6 | 5.5 | 2.8e-08 | -0.96 | 0.00 | 1.00 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | LOC646471 | 0.11 | 0.10 | enet | 5 | 0.09 | 7.4e-06 | -5.6 | 5.5 | 2.9e-08 | -0.99 | 0.00 | 0.99 | FALSE |
24 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | LOC646471 | 0.06 | 0.07 | lasso | 2 | 0.07 | 5.2e-04 | -5.5 | 5.7 | 1.5e-08 | -0.98 | 0.01 | 0.96 | FALSE |
25 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PAQR7 | 0.02 | 0.02 | blup | 58 | 0.01 | 2.1e-02 | -5.6 | 5.8 | 7.9e-09 | -0.93 | 0.02 | 0.84 | FALSE |
26 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LOC646471 | 0.12 | 0.14 | blup | 60 | 0.14 | 2.7e-10 | -5.6 | 5.8 | 7.3e-09 | -0.95 | 0.00 | 1.00 | FALSE |