[Hub]/) : Traits : Blood White Count : ← →

chr17:6,544,116-8,871,015

Best TWAS P=6.43e-13 · Best GWAS P=6.43e-17 conditioned to 1.81e-07

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	GTEx	Adipose Subcutaneous	CTC1	0.26	0.07	enet	22	0.08	6.9e-07	-6.3	5.4	7.7e-08	-0.03	0.81	0.19	FALSE
2	GTEx	Adipose Subcutaneous	RP11-849F2.8	0.16	0.08	lasso	9	0.07	3.5e-06	-6.3	6.7	2.7e-11	-0.07	0.55	0.42	FALSE
3	GTEx	Adipose Visceral Omentum	RP11-849F2.8	0.16	0.00	lasso	9	0.01	1.4e-01	-4.8	6.8	9.4e-12	-0.06	0.04	0.76	FALSE
4	GTEx	Artery Tibial	RP11-849F2.8	0.09	0.04	lasso	5	0.05	1.2e-04	-4.8	5.9	4.1e-09	-0.06	0.84	0.10	FALSE
5	GTEx	Brain Caudate basal ganglia	RP11-199F11.2	0.41	0.05	lasso	6	0.13	1.3e-04	-2.2	5.8	7.4e-09	-0.39	0.05	0.28	FALSE
6	GTEx	Colon Transverse	LSMD1	0.28	0.12	lasso	5	0.19	3.3e-09	4.5	5.7	1.4e-08	0.12	0.98	0.00	FALSE
7	GTEx	Colon Transverse	RP11-849F2.8	0.18	0.12	enet	25	0.10	2.5e-05	-6.4	5.2	1.9e-07	-0.09	0.58	0.37	FALSE
8	GTEx	Lung	CTC1	0.16	0.09	lasso	7	0.12	9.9e-10	-5.6	5.5	3.2e-08	-0.04	0.98	0.02	FALSE
9	GTEx	Lung	RP11-849F2.8	0.12	0.08	lasso	5	0.09	1.2e-07	-4.1	5.3	1.4e-07	-0.06	0.94	0.06	FALSE
10	GTEx	Nerve Tibial	RP11-849F2.8	0.22	0.09	enet	30	0.13	3.3e-09	-4.1	7.1	1.7e-12	-0.03	0.88	0.10	FALSE
11	GTEx	Stomach	RP11-849F2.8	0.16	0.01	enet	19	0.04	7.9e-03	-7.3	6.4	1.2e-10	-0.04	0.04	0.72	FALSE
12	GTEx	Testis	CYB5D1	0.37	0.12	lasso	4	0.12	4.2e-06	5.6	5.1	3.0e-07	0.09	0.98	0.00	FALSE
13	GTEx	Whole Blood	CTC1	0.13	0.09	lasso	8	0.09	8.6e-09	-6.3	6.8	8.5e-12	-0.08	0.95	0.05	FALSE
14	GTEx	Whole Blood	RP11-849F2.8	0.10	0.06	lasso	8	0.05	1.6e-05	-5.5	5.9	2.9e-09	-0.06	0.94	0.05	FALSE
15	METSIM	Adipose	CTC1	0.13	0.07	enet	25	0.08	5.8e-12	-6.3	5.4	6.1e-08	-0.05	0.96	0.04	FALSE
16	METSIM	Adipose	RP11-849F2.8	0.13	0.11	lasso	3	0.11	3.2e-16	-5.5	5.7	1.4e-08	-0.05	0.99	0.01	FALSE
17	NTR	Blood	C17orf68	0.03	0.03	lasso	3	0.03	3.9e-11	-5.6	5.4	5.6e-08	-0.04	1.00	0.00	FALSE
18	ROSMAP	Brain Pre-frontal Cortex	VAMP2	0.20	0.17	bslmm	412	0.20	1.7e-25	-4.1	5.6	2.2e-08	-0.08	1.00	0.00	FALSE
19	YFS	Blood	ACAP1	0.33	0.21	enet	34	0.29	1.1e-96	-8.4	6.9	5.0e-12	-0.85	0.00	1.00	TRUE
20	YFS	Blood	CYB5D1	0.28	0.19	bslmm	488	0.24	5.9e-79	5.6	-6.6	4.0e-11	-0.10	1.00	0.00	TRUE
21	YFS	Blood	PFAS	0.27	0.06	enet	88	0.16	2.1e-50	-6.8	-5.3	1.4e-07	0.01	0.62	0.38	FALSE
22	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	CYB5D1	0.04	0.03	blup	40	0.02	1.6e-02	4.6	-5.6	1.9e-08	-0.11	0.03	0.05	FALSE
23	The Cancer Genome Atlas	Breast Invasive Carcinoma	ACAP1	0.03	0.02	blup	60	0.01	1.5e-03	3.3	6.0	2.2e-09	-0.45	0.12	0.15	FALSE
24	The Cancer Genome Atlas	Lung Adenocarcinoma	CYB5D1	0.05	0.03	blup	40	0.03	1.9e-04	4.6	-5.8	8.8e-09	-0.10	0.06	0.03	FALSE
25	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	RANGRF	0.05	0.01	blup	46	0.02	4.0e-03	-3.4	-7.0	3.3e-12	0.03	0.01	0.88	FALSE
26	The Cancer Genome Atlas	Prostate Adenocarcinoma	PFAS	0.05	0.06	enet	6	0.03	1.5e-04	-7.3	-7.2	6.4e-13	0.07	0.01	0.99	TRUE
27	The Cancer Genome Atlas	Thyroid Carcinoma	C17orf44	0.04	0.01	enet	9	0.01	4.0e-02	-6.3	6.2	4.5e-10	-0.05	0.02	0.55	FALSE