Best TWAS P=4.23e-09 · Best GWAS P=1.55e-09 conditioned to 7.62e-11
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Thyroid Carcinoma | HKDC1 | 0.14 | 0.11 | lasso | 6 | 0.14 | 8.2e-14 | 4.5 | 5.9 | 4.2e-09 | 0.08 | 0.06 | 0.93 | TRUE |
| 2 | The Cancer Genome Atlas | Thyroid Carcinoma | SUPV3L1 | 0.03 | 0.01 | blup | 60 | 0.02 | 6.3e-03 | 2.9 | 5.6 | 2.7e-08 | 0.21 | 0.02 | 0.34 | FALSE |