TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Platelet Count
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chr14:80,248,805-82,137,009
Best TWAS P=1.97e-29 · Best GWAS P=2.8e-21 conditioned to 0.112
80.5M
81M
81.5M
82M
0
5
10
15
20
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
STON2
0.15
0.07
lasso
3
0.16
5.6e-18
7.6
-11.3
2.0e-29
0.74
0.00
1.00
TRUE
3
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
STON2
0.25
0.17
lasso
6
0.16
1.1e-09
7.6
-7.8
5.1e-15
0.13
0.99
0.01
FALSE
1
GTEx
Brain Cerebellar Hemisphere
CEP128
0.28
0.03
enet
36
0.10
1.6e-03
-1.0
5.6
2.0e-08
-0.24
0.19
0.13
FALSE