[Hub]/) : Traits : Blood Platelet Count : ← →

chr5:140,019,921-142,230,251

Best TWAS P=1.41e-34 · Best GWAS P=7.14e-40 conditioned to NaN

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 CommonMind Brain Pre-frontal Cortex PCDHGA2 0.04 0.03 enet 3 0.04 1.0e-05 4.717 -5.2 2.0e-07 0.05 0.14 0.85 FALSE
2 GTEx Esophagus Muscularis PCDHGA2 0.11 0.08 lasso 3 0.07 4.4e-05 5.085 -5.1 3.1e-07 0.07 0.08 0.90 FALSE
3 GTEx Muscle Skeletal NDFIP1 0.20 0.10 lasso 9 0.12 3.8e-12 -13.183 12.3 1.4e-34 -0.93 0.01 0.99 TRUE
4 GTEx Skin Not Sun Exposed Suprapubic GNPDA1 0.18 0.02 lasso 8 0.01 6.2e-02 -7.433 7.1 1.6e-12 -0.56 0.04 0.66 FALSE
5 GTEx Skin Sun Exposed Lower leg GNPDA1 0.11 0.00 enet 23 0.00 1.5e-01 7.025 5.8 7.8e-09 -0.69 0.02 0.92 TRUE
6 METSIM Adipose GNPDA1 0.10 0.03 lasso 6 0.04 3.5e-06 2.583 5.6 1.7e-08 -0.35 0.86 0.02 TRUE
7 METSIM Adipose NDFIP1 0.23 0.15 lasso 8 0.16 7.1e-23 -10.754 -10.0 2.2e-23 0.73 1.00 0.00 TRUE
8 NTR Blood NDFIP1 0.03 0.00 blup 610 0.01 2.9e-03 -8.111 -5.6 1.8e-08 0.63 0.02 0.96 FALSE
9 YFS Blood GNPDA1 0.06 0.03 blup 538 0.04 1.2e-13 -0.021 7.7 1.5e-14 -0.32 1.00 0.00 FALSE
10 The Cancer Genome Atlas Breast Invasive Carcinoma NDFIP1 0.04 0.01 lasso 3 0.01 1.2e-03 -2.530 5.4 5.2e-08 -0.65 0.09 0.24 FALSE
11 The Cancer Genome Atlas Lung Adenocarcinoma PCDHGA10 0.06 0.00 blup 93 0.01 6.7e-03 1.492 5.8 6.6e-09 -0.08 0.01 0.19 TRUE
12 The Cancer Genome Atlas Lung Squamous Cell Carcinoma PCDHGA8 0.05 0.01 blup 101 0.02 2.6e-03 -5.792 5.3 9.4e-08 -0.01 0.00 0.91 FALSE
13 The Cancer Genome Atlas Thyroid Carcinoma GNPDA1 0.11 0.00 blup 67 0.03 1.5e-03 -3.716 -5.5 4.2e-08 0.19 0.01 0.07 TRUE