TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Hair Pigment
:
←
→
chr19:41,233,298-42,626,207
Best TWAS P=8.82e-10 · Best GWAS P=1.76e-08 conditioned to 0.327
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Colon Adenocarcinoma
B9D2
0.08
0.05
blup
37
0.08
3.4e-05
4.0
6.1
8.8e-10
-0.41
0.16
0.35
TRUE
4
The Cancer Genome Atlas
Thyroid Carcinoma
AXL
0.05
0.02
blup
54
0.02
4.5e-03
-5.3
-5.8
8.2e-09
0.88
0.02
0.91
TRUE
1
GTEx
Colon Transverse
CTC-435M10.6
0.26
0.19
enet
19
0.22
5.8e-11
4.8
5.2
1.7e-07
0.00
0.34
0.65
TRUE
3
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
BCKDHA
0.03
0.03
enet
4
0.03
1.8e-04
-4.8
-5.9
4.3e-09
0.26
0.02
0.79
FALSE