Best TWAS P=7.99e-12 · Best GWAS P=3.83e-12 conditioned to 0.0745
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DRG2 | 0.09 | 0.07 | bslmm | 315 | 0.09 | 4.2e-11 | 5.1 | 5.8 | 6.3e-09 | -0.52 | 0.99 | 0.01 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | TOM1L2 | 0.19 | 0.24 | bslmm | 425 | 0.24 | 2.4e-29 | 5.4 | -5.4 | 8.1e-08 | 0.63 | 0.98 | 0.02 | FALSE |
3 | GTEx | Adipose Subcutaneous | TOM1L2 | 0.04 | 0.04 | lasso | 3 | 0.04 | 5.3e-04 | 5.2 | -5.4 | 6.5e-08 | 0.63 | 0.67 | 0.20 | FALSE |
4 | GTEx | Adipose Visceral Omentum | TOM1L2 | 0.15 | 0.13 | lasso | 4 | 0.11 | 3.6e-06 | 5.4 | -5.6 | 2.3e-08 | 0.64 | 0.93 | 0.06 | FALSE |
5 | GTEx | Adipose Visceral Omentum | TOP3A | 0.08 | 0.00 | enet | 15 | 0.00 | 6.5e-01 | 1.2 | -5.2 | 2.4e-07 | 0.37 | 0.06 | 0.23 | FALSE |
6 | GTEx | Artery Aorta | AC122129.1 | 0.06 | 0.01 | lasso | 5 | 0.00 | 3.6e-01 | 5.4 | -6.7 | 2.8e-11 | 0.84 | 0.06 | 0.79 | FALSE |
7 | GTEx | Artery Tibial | TOM1L2 | 0.06 | 0.02 | enet | 15 | 0.04 | 3.8e-04 | 5.9 | -6.3 | 3.4e-10 | 0.71 | 0.12 | 0.86 | FALSE |
8 | GTEx | Brain Cerebellum | TOM1L2 | 0.10 | 0.06 | lasso | 5 | 0.02 | 6.6e-02 | 5.6 | -6.0 | 1.4e-09 | 0.68 | 0.15 | 0.37 | FALSE |
9 | GTEx | Brain Putamen basal ganglia | LRRC48 | 0.14 | 0.01 | lasso | 18 | 0.02 | 1.3e-01 | 5.4 | 5.5 | 2.8e-08 | -0.58 | 0.12 | 0.12 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | SREBF1 | 0.09 | 0.01 | lasso | 11 | 0.01 | 3.2e-02 | 5.7 | 5.9 | 4.7e-09 | -0.63 | 0.20 | 0.09 | FALSE |
11 | GTEx | Colon Transverse | DRG2 | 0.10 | 0.07 | lasso | 7 | 0.08 | 1.4e-04 | 4.8 | -5.1 | 3.1e-07 | 0.57 | 0.88 | 0.09 | FALSE |
12 | GTEx | Esophagus Muscularis | TOM1L2 | 0.06 | 0.07 | enet | 12 | 0.05 | 4.3e-04 | 5.7 | -5.7 | 1.6e-08 | 0.64 | 0.69 | 0.24 | FALSE |
13 | GTEx | Muscle Skeletal | TOM1L2 | 0.08 | 0.11 | lasso | 6 | 0.10 | 5.3e-10 | 5.2 | -5.5 | 4.2e-08 | 0.65 | 0.98 | 0.02 | FALSE |
14 | GTEx | Muscle Skeletal | AC122129.1 | 0.13 | 0.14 | lasso | 4 | 0.13 | 7.3e-13 | 5.2 | -5.4 | 5.5e-08 | 0.63 | 0.95 | 0.05 | FALSE |
15 | GTEx | Nerve Tibial | TOM1L2 | 0.11 | 0.04 | enet | 43 | 0.10 | 1.5e-07 | 5.7 | -6.1 | 1.2e-09 | 0.54 | 0.52 | 0.47 | FALSE |
16 | GTEx | Ovary | TOM1L2 | 0.28 | 0.01 | lasso | 7 | 0.04 | 3.1e-02 | 5.6 | -6.3 | 3.9e-10 | 0.60 | 0.17 | 0.19 | FALSE |
17 | GTEx | Pituitary | TOM1L2 | 0.43 | 0.20 | enet | 18 | 0.11 | 1.3e-03 | -6.9 | -6.8 | 8.0e-12 | 0.90 | 0.05 | 0.94 | TRUE |
18 | GTEx | Thyroid | LRRC48 | 0.04 | 0.01 | enet | 16 | 0.01 | 2.7e-02 | 5.0 | 5.1 | 2.7e-07 | -0.47 | 0.38 | 0.09 | FALSE |
19 | GTEx | Whole Blood | SREBF1 | 0.04 | 0.06 | lasso | 5 | 0.05 | 2.4e-05 | 5.3 | -5.2 | 2.0e-07 | 0.61 | 0.95 | 0.04 | FALSE |
20 | ROSMAP | Brain Pre-frontal Cortex | GID4 | 0.07 | 0.04 | lasso | 5 | 0.03 | 4.1e-05 | 5.1 | 5.1 | 3.1e-07 | -0.51 | 0.97 | 0.02 | FALSE |
21 | YFS | Blood | SREBF1 | 0.07 | 0.11 | lasso | 7 | 0.11 | 2.2e-33 | 5.2 | -5.2 | 2.0e-07 | 0.65 | 0.99 | 0.01 | FALSE |
22 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TOM1L2 | 0.01 | 0.01 | blup | 83 | 0.01 | 1.8e-03 | 5.7 | -5.7 | 1.3e-08 | 0.64 | 0.12 | 0.61 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LLGL1 | 0.08 | 0.02 | blup | 53 | 0.05 | 6.0e-06 | 2.9 | 5.1 | 2.8e-07 | -0.27 | 0.00 | 0.13 | FALSE |
24 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ATPAF2 | 0.13 | 0.00 | blup | 44 | 0.04 | 8.4e-03 | 5.4 | 5.5 | 3.8e-08 | -0.48 | 0.02 | 0.77 | FALSE |
25 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | LRRC48 | 0.07 | 0.05 | enet | 12 | 0.04 | 7.0e-03 | 5.6 | 5.8 | 6.5e-09 | -0.62 | 0.03 | 0.71 | FALSE |
26 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SREBF1 | 0.04 | 0.03 | blup | 32 | 0.02 | 7.8e-03 | 5.0 | 5.7 | 1.1e-08 | -0.64 | 0.01 | 0.84 | FALSE |
27 | The Cancer Genome Atlas | Thyroid Carcinoma | C17orf39 | 0.05 | 0.05 | blup | 49 | 0.05 | 5.8e-06 | 5.4 | 5.5 | 4.6e-08 | -0.57 | 0.02 | 0.97 | FALSE |