Best TWAS P=9.42e-20 · Best GWAS P=6.55e-16 conditioned to 0.000111
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | REEP3 | 0.05 | 0.05 | lasso | 3 | 0.04 | 5.9e-06 | -7.4 | -7.7 | 1.6e-14 | 0.88 | 0.07 | 0.93 | FALSE |
2 | GTEx | Brain Cortex | NRBF2 | 0.30 | 0.26 | enet | 24 | 0.21 | 1.4e-06 | 7.6 | 7.4 | 1.5e-13 | -0.87 | 0.05 | 0.94 | FALSE |
3 | GTEx | Brain Frontal Cortex BA9 | NRBF2 | 0.25 | 0.17 | lasso | 6 | 0.16 | 6.1e-05 | -7.4 | 7.8 | 9.1e-15 | -0.88 | 0.05 | 0.92 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | JMJD1C | 0.09 | 0.01 | enet | 18 | 0.07 | 8.6e-06 | 6.7 | 7.1 | 9.9e-13 | -0.50 | 0.18 | 0.56 | FALSE |
5 | GTEx | Esophagus Mucosa | NRBF2 | 0.14 | 0.11 | lasso | 10 | 0.11 | 6.4e-08 | -7.7 | 7.9 | 3.8e-15 | -0.87 | 0.02 | 0.98 | FALSE |
6 | GTEx | Esophagus Muscularis | NRBF2 | 0.10 | 0.03 | enet | 22 | 0.03 | 3.8e-03 | -6.4 | 5.7 | 9.2e-09 | -0.71 | 0.03 | 0.93 | FALSE |
7 | GTEx | Muscle Skeletal | RP11-436D10.3 | 0.08 | 0.04 | enet | 13 | 0.06 | 3.2e-06 | -5.9 | 5.4 | 5.7e-08 | -0.02 | 0.94 | 0.01 | FALSE |
8 | GTEx | Nerve Tibial | NRBF2 | 0.08 | 0.09 | enet | 11 | 0.06 | 5.0e-05 | -7.7 | 8.2 | 3.5e-16 | -0.83 | 0.08 | 0.92 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | NRBF2 | 0.06 | 0.01 | lasso | 3 | 0.00 | 4.0e-01 | -6.2 | 9.1 | 9.4e-20 | -0.53 | 0.06 | 0.32 | TRUE |
10 | GTEx | Stomach | NRBF2 | 0.09 | 0.04 | lasso | 6 | 0.03 | 1.6e-02 | 5.0 | 6.2 | 5.6e-10 | -0.67 | 0.06 | 0.56 | FALSE |
11 | GTEx | Testis | NRBF2 | 0.14 | 0.08 | lasso | 12 | 0.09 | 6.7e-05 | -7.7 | 7.3 | 3.7e-13 | -0.89 | 0.08 | 0.90 | FALSE |
12 | GTEx | Thyroid | NRBF2 | 0.11 | 0.05 | lasso | 3 | 0.07 | 2.5e-06 | 4.0 | 7.4 | 1.1e-13 | -0.66 | 0.10 | 0.88 | FALSE |
13 | ROSMAP | Brain Pre-frontal Cortex | NRBF2 | 0.34 | 0.46 | lasso | 5 | 0.46 | 3.1e-66 | -7.4 | 7.5 | 5.6e-14 | -0.89 | 0.19 | 0.81 | FALSE |
14 | ROSMAP | Brain Pre-frontal Cortex | REEP3 | 0.10 | 0.11 | lasso | 8 | 0.09 | 7.2e-12 | 4.8 | -5.4 | 7.2e-08 | 0.67 | 1.00 | 0.00 | FALSE |
15 | ROSMAP | Brain Pre-frontal Cortex | ADO | 0.06 | 0.04 | lasso | 2 | 0.06 | 3.1e-08 | -5.9 | 5.9 | 3.4e-09 | -0.10 | 0.99 | 0.00 | FALSE |
16 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | NRBF2 | 0.07 | 0.04 | blup | 42 | 0.02 | 7.3e-03 | -7.5 | 6.2 | 4.2e-10 | -0.77 | 0.00 | 0.99 | FALSE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NRBF2 | 0.05 | 0.06 | lasso | 2 | 0.06 | 5.5e-12 | -7.4 | 7.4 | 1.2e-13 | -0.89 | 0.00 | 1.00 | FALSE |
18 | The Cancer Genome Atlas | Colon Adenocarcinoma | NRBF2 | 0.13 | 0.10 | enet | 11 | 0.09 | 4.9e-06 | -7.4 | 6.1 | 1.3e-09 | -0.70 | 0.00 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Glioblastoma Multiforme | JMJD1C | 0.11 | 0.02 | blup | 87 | 0.05 | 1.4e-02 | -7.5 | 7.6 | 4.0e-14 | -0.80 | 0.02 | 0.60 | FALSE |
20 | The Cancer Genome Atlas | Glioblastoma Multiforme | NRBF2 | 0.17 | 0.09 | enet | 10 | 0.13 | 1.1e-04 | -7.4 | 7.1 | 1.4e-12 | -0.80 | 0.01 | 0.95 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NRBF2 | 0.04 | 0.04 | enet | 5 | 0.03 | 1.3e-04 | -7.5 | 7.0 | 2.2e-12 | -0.87 | 0.00 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NRBF2 | 0.10 | 0.06 | lasso | 7 | 0.08 | 3.5e-09 | 3.9 | 6.2 | 7.3e-10 | -0.79 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NRBF2 | 0.08 | 0.08 | enet | 6 | 0.08 | 4.3e-09 | -7.4 | 7.4 | 1.1e-13 | -0.90 | 0.00 | 1.00 | FALSE |
24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | REEP3 | 0.04 | 0.04 | blup | 59 | 0.05 | 1.8e-06 | 3.5 | -6.4 | 1.6e-10 | 0.72 | 0.05 | 0.94 | FALSE |
25 | The Cancer Genome Atlas | Lung Adenocarcinoma | ADO | 0.14 | 0.05 | blup | 53 | 0.05 | 3.8e-06 | -6.2 | 5.7 | 1.4e-08 | -0.07 | 0.00 | 1.00 | FALSE |
26 | The Cancer Genome Atlas | Lung Adenocarcinoma | NRBF2 | 0.09 | 0.06 | enet | 8 | 0.07 | 2.7e-08 | -7.5 | 7.0 | 2.6e-12 | -0.84 | 0.00 | 1.00 | FALSE |
27 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NRBF2 | 0.09 | 0.02 | enet | 6 | 0.04 | 1.4e-05 | 3.3 | 5.9 | 3.1e-09 | -0.77 | 0.07 | 0.89 | FALSE |
28 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ADO | 0.06 | 0.04 | blup | 55 | 0.01 | 1.4e-01 | -5.9 | 5.5 | 3.7e-08 | -0.07 | 0.01 | 0.81 | FALSE |
29 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | LOC84989 | 0.10 | 0.05 | blup | 19 | 0.04 | 7.7e-03 | 4.3 | 6.1 | 1.2e-09 | -0.62 | 0.01 | 0.36 | FALSE |
30 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NRBF2 | 0.18 | 0.13 | enet | 11 | 0.08 | 2.5e-04 | -7.5 | 7.8 | 6.5e-15 | -0.87 | 0.00 | 1.00 | FALSE |
31 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | NRBF2 | 0.08 | 0.02 | blup | 40 | 0.04 | 8.6e-03 | -7.4 | 6.3 | 3.0e-10 | -0.78 | 0.00 | 0.90 | FALSE |
32 | The Cancer Genome Atlas | Prostate Adenocarcinoma | JMJD1C | 0.04 | 0.01 | blup | 88 | 0.01 | 9.7e-03 | -7.4 | 6.6 | 4.3e-11 | -0.76 | 0.02 | 0.82 | FALSE |
33 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NRBF2 | 0.08 | 0.09 | lasso | 6 | 0.08 | 9.7e-09 | -7.5 | 7.3 | 2.0e-13 | -0.89 | 0.00 | 1.00 | FALSE |
34 | The Cancer Genome Atlas | Thyroid Carcinoma | ADO | 0.12 | 0.10 | lasso | 5 | 0.09 | 5.2e-09 | -5.9 | 6.0 | 1.6e-09 | -0.05 | 0.00 | 1.00 | FALSE |
35 | The Cancer Genome Atlas | Thyroid Carcinoma | NRBF2 | 0.14 | 0.10 | enet | 16 | 0.09 | 8.1e-09 | -7.5 | 7.2 | 4.3e-13 | -0.89 | 0.00 | 1.00 | FALSE |