Best TWAS P=1.54e-11 · Best GWAS P=3.64e-09 conditioned to 0.659
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | WRB | 0.57 | 0.58 | enet | 19 | 0.59 | 4.8e-56 | 5.0 | 5.2 | 2.3e-07 | 0.69 | 0.18 | 0.82 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | LCA5L | 0.65 | 0.53 | lasso | 7 | 0.49 | 1.8e-14 | 5.0 | 5.2 | 1.6e-07 | 0.70 | 0.17 | 0.83 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | WRB | 0.43 | 0.46 | enet | 23 | 0.48 | 4.0e-40 | 5.0 | 5.5 | 4.7e-08 | 0.72 | 0.17 | 0.83 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | HMGN1 | 0.07 | 0.03 | lasso | 4 | 0.03 | 2.1e-03 | 5.6 | -5.3 | 9.0e-08 | -0.63 | 0.03 | 0.95 | FALSE |
5 | GTEx | Esophagus Muscularis | WRB | 0.34 | 0.38 | lasso | 5 | 0.39 | 7.1e-25 | 5.0 | 5.3 | 1.1e-07 | 0.72 | 0.17 | 0.83 | FALSE |
6 | GTEx | Heart Left Ventricle | LCA5L | 0.27 | 0.22 | lasso | 6 | 0.24 | 3.4e-13 | 5.0 | 5.3 | 1.2e-07 | 0.72 | 0.12 | 0.88 | FALSE |
7 | GTEx | Muscle Skeletal | BRWD1-IT2 | 0.06 | 0.02 | lasso | 4 | 0.01 | 1.7e-02 | 5.6 | 5.9 | 4.5e-09 | 0.61 | 0.03 | 0.94 | FALSE |
8 | GTEx | Nerve Tibial | WRB | 0.47 | 0.43 | lasso | 4 | 0.43 | 3.5e-33 | 5.0 | 5.2 | 2.1e-07 | 0.74 | 0.18 | 0.82 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | WRB | 0.35 | 0.31 | lasso | 3 | 0.31 | 1.4e-17 | 5.0 | 5.4 | 6.9e-08 | 0.82 | 0.14 | 0.85 | FALSE |
10 | GTEx | Stomach | BRWD1-IT2 | 0.16 | 0.10 | enet | 13 | 0.07 | 3.4e-04 | 2.2 | 5.3 | 1.0e-07 | 0.54 | 0.05 | 0.77 | FALSE |
11 | GTEx | Testis | HMGN1 | 0.21 | 0.22 | lasso | 3 | 0.21 | 9.7e-10 | 5.6 | -5.4 | 5.1e-08 | -0.53 | 0.01 | 0.99 | FALSE |
12 | GTEx | Whole Blood | WRB | 0.22 | 0.12 | lasso | 7 | 0.11 | 3.0e-10 | 4.8 | 5.8 | 8.4e-09 | 0.86 | 0.07 | 0.93 | FALSE |
13 | GTEx | Whole Blood | PSMG1 | 0.12 | 0.00 | lasso | 1 | 0.00 | 3.9e-01 | 5.4 | 5.4 | 8.2e-08 | 0.83 | 0.01 | 0.97 | FALSE |
14 | METSIM | Adipose | HMGN1 | 0.11 | 0.13 | lasso | 5 | 0.11 | 9.7e-17 | 5.6 | -5.6 | 2.6e-08 | -0.54 | 0.01 | 0.99 | FALSE |
15 | METSIM | Adipose | WRB | 0.18 | 0.27 | lasso | 7 | 0.27 | 5.7e-40 | 5.2 | 5.3 | 1.2e-07 | 0.77 | 0.14 | 0.86 | FALSE |
16 | NTR | Blood | LCA5L | 0.04 | 0.04 | bslmm | 718 | 0.03 | 4.5e-11 | 5.1 | 5.2 | 2.3e-07 | 0.72 | 0.15 | 0.85 | FALSE |
17 | NTR | Blood | WRB | 0.07 | 0.07 | enet | 13 | 0.08 | 5.9e-24 | 5.2 | 5.7 | 1.5e-08 | 0.77 | 0.07 | 0.93 | FALSE |
18 | YFS | Blood | WRB | 0.20 | 0.29 | enet | 18 | 0.29 | 8.4e-95 | 5.1 | 5.4 | 5.1e-08 | 0.74 | 0.16 | 0.84 | FALSE |
19 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | HMGN1 | 0.07 | 0.12 | lasso | 5 | 0.09 | 6.2e-08 | 5.6 | -5.8 | 6.0e-09 | -0.60 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | HMGN1 | 0.04 | 0.05 | lasso | 4 | 0.05 | 5.9e-10 | 5.6 | -5.2 | 2.1e-07 | -0.51 | 0.01 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WRB | 0.04 | 0.06 | blup | 48 | 0.06 | 7.3e-12 | 4.9 | 5.2 | 1.8e-07 | 0.73 | 0.20 | 0.80 | FALSE |
22 | The Cancer Genome Atlas | Colon Adenocarcinoma | HMGN1 | 0.06 | 0.03 | blup | 43 | 0.05 | 1.3e-03 | 5.6 | -5.2 | 2.3e-07 | -0.61 | 0.01 | 0.87 | FALSE |
23 | The Cancer Genome Atlas | Glioblastoma Multiforme | HMGN1 | 0.19 | 0.04 | blup | 43 | 0.08 | 2.1e-03 | 5.4 | -6.7 | 1.5e-11 | -0.84 | 0.01 | 0.86 | TRUE |
24 | The Cancer Genome Atlas | Glioblastoma Multiforme | WRB | 0.15 | 0.10 | blup | 48 | 0.14 | 4.8e-05 | 5.0 | 5.4 | 5.9e-08 | 0.76 | 0.02 | 0.90 | FALSE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HMGN1 | 0.08 | 0.10 | lasso | 2 | 0.09 | 8.7e-11 | 5.6 | -5.6 | 1.8e-08 | -0.55 | 0.01 | 0.99 | FALSE |
26 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LCA5L | 0.04 | 0.03 | blup | 53 | 0.04 | 2.0e-05 | 5.9 | 5.3 | 9.7e-08 | 0.76 | 0.00 | 1.00 | FALSE |
27 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WRB | 0.05 | 0.05 | enet | 12 | 0.05 | 9.1e-07 | 5.0 | 5.5 | 3.2e-08 | 0.72 | 0.15 | 0.85 | FALSE |
28 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | HMGN1 | 0.17 | 0.14 | lasso | 4 | 0.14 | 2.4e-15 | 5.6 | -5.4 | 8.7e-08 | -0.52 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | WRB | 0.11 | 0.12 | enet | 6 | 0.12 | 2.5e-07 | 5.1 | 5.4 | 6.7e-08 | 0.76 | 0.07 | 0.92 | FALSE |
30 | The Cancer Genome Atlas | Brain Lower Grade Glioma | HMGN1 | 0.14 | 0.08 | blup | 43 | 0.08 | 3.9e-09 | 5.6 | -5.1 | 3.0e-07 | -0.48 | 0.01 | 0.99 | FALSE |
31 | The Cancer Genome Atlas | Brain Lower Grade Glioma | WRB | 0.17 | 0.32 | enet | 11 | 0.31 | 4.6e-36 | 5.0 | 5.1 | 2.8e-07 | 0.70 | 0.16 | 0.84 | FALSE |
32 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | HMGN1 | 0.05 | 0.03 | lasso | 3 | 0.03 | 1.6e-04 | 4.7 | -5.3 | 1.4e-07 | -0.67 | 0.02 | 0.94 | FALSE |
33 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | HMGN1 | 0.06 | 0.05 | blup | 43 | 0.02 | 1.6e-02 | 5.6 | -5.6 | 1.8e-08 | -0.62 | 0.01 | 0.87 | FALSE |
34 | The Cancer Genome Atlas | Prostate Adenocarcinoma | WRB | 0.08 | 0.08 | lasso | 4 | 0.08 | 6.1e-09 | 5.1 | 5.8 | 7.0e-09 | 0.85 | 0.03 | 0.97 | FALSE |
35 | The Cancer Genome Atlas | Soft Tissue Sarcoma | WRB | 0.10 | 0.13 | blup | 48 | 0.13 | 4.9e-08 | 4.9 | 5.8 | 7.0e-09 | 0.75 | 0.07 | 0.93 | FALSE |
36 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | WRB | 0.12 | 0.06 | blup | 48 | 0.10 | 1.2e-03 | 2.5 | 5.6 | 2.8e-08 | 0.78 | 0.01 | 0.56 | FALSE |
37 | The Cancer Genome Atlas | Stomach Adenocarcinoma | HMGN1 | 0.07 | 0.08 | lasso | 2 | 0.06 | 2.9e-05 | 5.6 | -5.6 | 1.8e-08 | -0.55 | 0.01 | 0.99 | FALSE |
38 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LCA5L | 0.09 | 0.01 | blup | 53 | 0.02 | 6.1e-02 | 5.2 | 5.1 | 3.1e-07 | 0.64 | 0.02 | 0.36 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | HMGN1 | 0.15 | 0.21 | lasso | 4 | 0.20 | 9.9e-19 | 5.6 | -5.2 | 1.8e-07 | -0.51 | 0.01 | 0.99 | FALSE |
40 | The Cancer Genome Atlas | Thyroid Carcinoma | WRB | 0.13 | 0.25 | lasso | 8 | 0.26 | 4.2e-25 | 5.1 | 5.4 | 7.6e-08 | 0.76 | 0.15 | 0.85 | FALSE |
41 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | HMGN1 | 0.23 | 0.09 | enet | 8 | 0.18 | 9.6e-06 | -4.0 | -5.4 | 8.7e-08 | -0.52 | 0.03 | 0.96 | FALSE |