Best TWAS P=1.53e-13 · Best GWAS P=2.01e-12 conditioned to 0.118
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DHX36 | 0.05 | 0.06 | blup | 357 | 0.05 | 1.3e-06 | -6.7 | -7.2 | 5.3e-13 | 0.81 | 0.05 | 0.95 | FALSE |
2 | GTEx | Adipose Subcutaneous | ARHGEF26 | 0.10 | 0.06 | enet | 8 | 0.07 | 2.2e-06 | -6.7 | 6.3 | 2.4e-10 | -0.66 | 0.07 | 0.93 | FALSE |
3 | GTEx | Artery Tibial | ARHGEF26 | 0.11 | 0.12 | enet | 12 | 0.12 | 5.9e-10 | -6.8 | 7.4 | 1.5e-13 | -0.84 | 0.06 | 0.94 | TRUE |
4 | GTEx | Breast Mammary Tissue | DHX36 | 0.15 | 0.07 | enet | 14 | 0.05 | 9.4e-04 | -7.0 | -6.4 | 1.4e-10 | 0.91 | 0.04 | 0.95 | FALSE |
5 | GTEx | Breast Mammary Tissue (Female) | DHX36 | 0.14 | 0.08 | lasso | 2 | 0.08 | 2.0e-03 | -5.5 | -5.7 | 9.3e-09 | 0.63 | 0.07 | 0.43 | FALSE |
6 | GTEx | Esophagus Gastroesophageal Junction | DHX36 | 0.19 | 0.16 | lasso | 7 | 0.12 | 6.1e-05 | -7.0 | -6.6 | 5.0e-11 | 0.98 | 0.03 | 0.96 | FALSE |
7 | GTEx | Esophagus Muscularis | DHX36 | 0.14 | 0.15 | lasso | 2 | 0.13 | 2.2e-08 | -5.2 | -5.3 | 1.5e-07 | 0.87 | 0.75 | 0.25 | FALSE |
8 | GTEx | Nerve Tibial | DHX36 | 0.10 | 0.11 | lasso | 2 | 0.10 | 1.3e-07 | -5.2 | -5.2 | 1.6e-07 | 0.87 | 0.23 | 0.77 | FALSE |
9 | GTEx | Ovary | ARHGEF26 | 0.14 | 0.03 | enet | 15 | 0.06 | 1.4e-02 | 4.2 | 5.2 | 2.3e-07 | -0.52 | 0.09 | 0.36 | FALSE |
10 | GTEx | Pancreas | ARHGEF26 | 0.26 | 0.26 | lasso | 5 | 0.28 | 3.2e-12 | -6.6 | 6.2 | 6.0e-10 | -0.61 | 0.07 | 0.93 | FALSE |
11 | GTEx | Skin Not Sun Exposed Suprapubic | ARHGEF26 | 0.13 | 0.11 | lasso | 4 | 0.07 | 6.8e-05 | -6.6 | 5.7 | 1.4e-08 | -0.54 | 0.07 | 0.93 | FALSE |
12 | GTEx | Spleen | DHX36 | 0.39 | 0.09 | enet | 21 | 0.34 | 2.1e-09 | -5.2 | -5.4 | 5.5e-08 | 0.75 | 0.12 | 0.87 | FALSE |
13 | GTEx | Thyroid | ARHGEF26 | 0.09 | 0.07 | enet | 17 | 0.08 | 1.9e-06 | -6.7 | 6.8 | 1.5e-11 | -0.73 | 0.05 | 0.95 | FALSE |
14 | GTEx | Thyroid | DHX36 | 0.06 | 0.01 | lasso | 4 | 0.02 | 1.7e-02 | -5.5 | -6.5 | 1.0e-10 | 0.75 | 0.10 | 0.75 | FALSE |
15 | METSIM | Adipose | ARHGEF26 | 0.07 | 0.08 | lasso | 6 | 0.07 | 3.5e-11 | -6.7 | 7.1 | 1.0e-12 | -0.66 | 0.05 | 0.95 | FALSE |
16 | METSIM | Adipose | DHX36 | 0.08 | 0.05 | blup | 358 | 0.05 | 3.5e-08 | -7.0 | -5.2 | 2.6e-07 | 0.87 | 0.03 | 0.97 | FALSE |
17 | YFS | Blood | DHX36 | 0.11 | 0.19 | lasso | 11 | 0.21 | 9.1e-68 | -5.3 | -5.9 | 3.1e-09 | 0.83 | 1.00 | 0.00 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DHX36 | 0.07 | 0.07 | blup | 50 | 0.07 | 1.1e-13 | -5.2 | -5.3 | 9.7e-08 | 0.85 | 0.14 | 0.86 | FALSE |
19 | The Cancer Genome Atlas | Glioblastoma Multiforme | SGEF | 0.17 | 0.13 | blup | 74 | 0.14 | 5.5e-05 | -6.9 | -6.5 | 9.0e-11 | 0.90 | 0.02 | 0.92 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DHX36 | 0.07 | 0.06 | lasso | 6 | 0.08 | 4.8e-09 | -5.2 | -5.9 | 3.6e-09 | 0.83 | 0.04 | 0.96 | FALSE |
21 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SGEF | 0.04 | 0.04 | enet | 12 | 0.04 | 1.1e-05 | -6.8 | 6.5 | 8.7e-11 | -0.72 | 0.05 | 0.94 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DHX36 | 0.09 | 0.10 | lasso | 1 | 0.09 | 4.8e-06 | -5.2 | -5.2 | 2.2e-07 | 0.87 | 0.13 | 0.85 | FALSE |
23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DHX36 | 0.11 | 0.09 | enet | 11 | 0.10 | 6.4e-12 | -5.9 | -7.4 | 1.7e-13 | 0.83 | 0.01 | 0.99 | FALSE |
24 | The Cancer Genome Atlas | Lung Adenocarcinoma | DHX36 | 0.09 | 0.07 | blup | 50 | 0.07 | 1.6e-08 | -5.2 | -5.7 | 9.7e-09 | 0.85 | 0.11 | 0.89 | FALSE |
25 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DHX36 | 0.08 | 0.02 | blup | 50 | 0.03 | 1.4e-02 | -5.6 | -5.5 | 3.6e-08 | 0.74 | 0.01 | 0.89 | FALSE |
26 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DHX36 | 0.26 | 0.14 | blup | 50 | 0.16 | 6.5e-07 | -5.3 | -6.1 | 1.1e-09 | 0.85 | 0.08 | 0.88 | FALSE |
27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DHX36 | 0.11 | 0.11 | lasso | 8 | 0.13 | 8.5e-14 | -5.2 | -5.8 | 5.3e-09 | 0.83 | 0.08 | 0.92 | FALSE |
28 | The Cancer Genome Atlas | Thyroid Carcinoma | DHX36 | 0.16 | 0.17 | blup | 50 | 0.19 | 7.7e-18 | -5.2 | -5.6 | 2.6e-08 | 0.81 | 0.08 | 0.92 | FALSE |