Best TWAS P=4.41e-25 · Best GWAS P=6.59e-26 conditioned to 0.373
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | SEPP1 | 0.06 | 0.00 | blup | 330 | 0.04 | 1.9e-05 | -0.59 | 5.6 | 1.9e-08 | 0.53 | 0.26 | 0.35 | FALSE |
2 | GTEx | Adipose Subcutaneous | CCDC152 | 0.09 | 0.04 | lasso | 4 | 0.02 | 6.4e-03 | -5.04 | -5.3 | 1.3e-07 | -0.38 | 0.88 | 0.00 | FALSE |
3 | GTEx | Artery Aorta | CCDC152 | 0.31 | 0.24 | lasso | 8 | 0.24 | 2.5e-13 | -5.11 | -5.5 | 3.5e-08 | -0.39 | 1.00 | 0.00 | FALSE |
4 | GTEx | Artery Coronary | CCDC152 | 0.20 | 0.13 | lasso | 2 | 0.12 | 7.7e-05 | -5.11 | -5.1 | 2.9e-07 | -0.36 | 0.68 | 0.04 | FALSE |
5 | GTEx | Artery Tibial | CCDC152 | 0.22 | 0.17 | enet | 35 | 0.18 | 1.8e-14 | -5.11 | -5.5 | 3.3e-08 | -0.40 | 1.00 | 0.00 | FALSE |
6 | GTEx | Artery Tibial | OXCT1-AS1 | 0.07 | 0.04 | lasso | 3 | 0.03 | 1.6e-03 | 7.34 | 7.5 | 6.2e-14 | 0.37 | 0.26 | 0.04 | FALSE |
7 | GTEx | Brain Frontal Cortex BA9 | GHR | 0.14 | 0.02 | lasso | 9 | 0.06 | 9.9e-03 | -8.79 | 9.4 | 4.5e-21 | 0.46 | 0.11 | 0.20 | FALSE |
8 | GTEx | Breast Mammary Tissue (Female) | SEPP1 | 0.15 | 0.00 | enet | 29 | 0.02 | 1.0e-01 | 0.62 | 6.3 | 2.6e-10 | 0.48 | 0.06 | 0.19 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | OXCT1 | 0.22 | 0.17 | lasso | 4 | 0.13 | 4.7e-05 | 6.43 | 6.6 | 5.2e-11 | 0.36 | 0.29 | 0.05 | FALSE |
10 | GTEx | Esophagus Muscularis | CCDC152 | 0.13 | 0.09 | lasso | 8 | 0.10 | 7.9e-07 | -4.49 | -5.4 | 6.7e-08 | -0.37 | 0.96 | 0.00 | FALSE |
11 | GTEx | Muscle Skeletal | OXCT1-AS1 | 0.10 | 0.02 | enet | 25 | 0.08 | 2.9e-08 | 1.76 | 5.2 | 2.3e-07 | 0.28 | 0.46 | 0.46 | FALSE |
12 | GTEx | Stomach | SERBP1P6 | 0.12 | 0.03 | enet | 16 | 0.01 | 6.7e-02 | 1.81 | -5.4 | 8.0e-08 | -0.37 | 0.08 | 0.18 | FALSE |
13 | GTEx | Thyroid | GHR | 0.08 | 0.04 | enet | 25 | 0.04 | 2.5e-04 | -4.49 | -6.2 | 4.8e-10 | -0.32 | 0.13 | 0.07 | FALSE |
14 | GTEx | Thyroid | CCDC152 | 0.10 | 0.07 | lasso | 4 | 0.04 | 4.2e-04 | -5.10 | -5.1 | 3.1e-07 | -0.36 | 0.82 | 0.01 | FALSE |
15 | ROSMAP | Brain Pre-frontal Cortex | GHR | 0.04 | 0.02 | blup | 374 | 0.03 | 5.4e-05 | 6.32 | 8.0 | 1.0e-15 | 0.45 | 0.73 | 0.02 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | C5orf51 | 0.03 | 0.01 | bslmm | 298 | 0.02 | 1.9e-03 | 1.71 | -5.7 | 1.6e-08 | -0.40 | 0.15 | 0.51 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | SEPP1 | 0.18 | 0.19 | lasso | 11 | 0.21 | 1.3e-26 | -5.06 | 5.3 | 8.6e-08 | 0.40 | 1.00 | 0.00 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | OXCT1 | 0.03 | 0.03 | enet | 8 | 0.03 | 1.4e-06 | 7.84 | 8.3 | 9.2e-17 | 0.39 | 0.01 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | OXCT1 | 0.04 | 0.05 | blup | 58 | 0.05 | 9.4e-07 | 7.92 | 7.5 | 7.3e-14 | 0.40 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CCDC152 | 0.11 | 0.02 | enet | 7 | 0.05 | 1.3e-03 | -5.04 | 5.2 | 2.4e-07 | 0.31 | 0.06 | 0.31 | FALSE |
21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GHR | 0.12 | 0.11 | enet | 6 | 0.13 | 2.5e-13 | 9.23 | 10.3 | 4.4e-25 | 0.85 | 0.20 | 0.80 | TRUE |
22 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | OXCT1 | 0.12 | 0.02 | blup | 58 | 0.06 | 4.0e-03 | 7.92 | 8.0 | 9.3e-16 | 0.42 | 0.01 | 0.83 | FALSE |
23 | The Cancer Genome Atlas | Thyroid Carcinoma | OXCT1 | 0.05 | 0.04 | blup | 58 | 0.04 | 5.3e-05 | 7.41 | 5.9 | 3.4e-09 | 0.23 | 0.14 | 0.74 | TRUE |