Best TWAS P=1.99e-16 · Best GWAS P=6.34e-12 conditioned to 0.00363
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FBLN7 | 0.21 | 0.09 | lasso | 18 | 0.20 | 2.2e-24 | 3.9 | 6.3 | 2.8e-10 | 0.25 | 0.97 | 0.03 | FALSE |
2 | GTEx | Artery Aorta | MERTK | 0.15 | 0.10 | lasso | 3 | 0.08 | 5.6e-05 | 6.5 | 5.6 | 2.6e-08 | 0.66 | 0.10 | 0.66 | FALSE |
3 | GTEx | Artery Coronary | CHCHD5 | 0.13 | 0.03 | lasso | 4 | 0.00 | 2.8e-01 | -6.6 | 5.8 | 5.4e-09 | 0.06 | 0.05 | 0.63 | FALSE |
4 | GTEx | Artery Tibial | FBLN7 | 0.48 | 0.37 | enet | 7 | 0.38 | 3.3e-31 | -5.1 | -5.9 | 4.1e-09 | -0.22 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Tibial | TMEM87B | 0.12 | 0.08 | lasso | 9 | 0.07 | 5.5e-06 | 5.6 | 5.2 | 2.0e-07 | 0.15 | 0.84 | 0.15 | FALSE |
6 | GTEx | Brain Cortex | FBLN7 | 0.25 | 0.00 | lasso | 11 | 0.00 | 2.6e-01 | 3.9 | 6.1 | 1.4e-09 | 0.32 | 0.06 | 0.10 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | MERTK | 0.18 | 0.04 | lasso | 9 | 0.03 | 3.3e-03 | 6.5 | 7.4 | 1.1e-13 | 0.60 | 0.10 | 0.55 | FALSE |
8 | GTEx | Colon Sigmoid | MERTK | 0.47 | 0.07 | lasso | 10 | 0.20 | 1.9e-07 | 6.5 | 8.2 | 2.0e-16 | 0.54 | 0.10 | 0.86 | TRUE |
9 | GTEx | Esophagus Mucosa | MERTK | 0.21 | 0.05 | lasso | 6 | 0.05 | 1.6e-04 | 6.5 | 6.5 | 9.3e-11 | 0.68 | 0.12 | 0.84 | FALSE |
10 | GTEx | Esophagus Muscularis | MERTK | 0.49 | 0.12 | enet | 40 | 0.11 | 3.4e-07 | 6.5 | 6.5 | 6.5e-11 | 0.33 | 0.11 | 0.85 | FALSE |
11 | GTEx | Lung | MERTK | 0.34 | 0.07 | lasso | 6 | 0.05 | 1.2e-04 | 6.5 | 6.4 | 1.5e-10 | 0.72 | 0.10 | 0.68 | FALSE |
12 | GTEx | Muscle Skeletal | MERTK | 0.26 | 0.05 | lasso | 7 | 0.04 | 4.3e-05 | 5.0 | 7.0 | 3.5e-12 | 0.32 | 0.45 | 0.37 | FALSE |
13 | GTEx | Muscle Skeletal | TMEM87B | 0.04 | 0.01 | enet | 9 | 0.01 | 5.3e-02 | -6.7 | -5.6 | 2.0e-08 | 0.00 | 0.07 | 0.80 | FALSE |
14 | GTEx | Pancreas | MERTK | 0.31 | 0.34 | enet | 13 | 0.38 | 3.4e-17 | -5.6 | -5.6 | 2.3e-08 | -0.02 | 0.17 | 0.83 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | MERTK | 0.33 | 0.08 | enet | 48 | 0.11 | 3.7e-09 | 6.5 | 5.8 | 6.5e-09 | 0.05 | 0.11 | 0.85 | FALSE |
16 | GTEx | Thyroid | FBLN7 | 0.50 | 0.19 | lasso | 8 | 0.31 | 1.5e-24 | 3.9 | -5.8 | 6.4e-09 | -0.27 | 0.97 | 0.03 | FALSE |
17 | GTEx | Thyroid | TMEM87B | 0.09 | 0.00 | lasso | 5 | 0.01 | 1.1e-01 | -5.7 | -7.2 | 7.5e-13 | -0.15 | 0.08 | 0.36 | FALSE |
18 | GTEx | Vagina | FBLN7 | 0.39 | 0.05 | lasso | 11 | 0.07 | 1.1e-02 | 5.0 | -5.9 | 3.8e-09 | -0.55 | 0.05 | 0.50 | FALSE |
19 | METSIM | Adipose | FBLN7 | 0.14 | 0.03 | enet | 20 | 0.08 | 4.1e-12 | -5.1 | -6.2 | 4.7e-10 | -0.40 | 0.96 | 0.04 | FALSE |
20 | METSIM | Adipose | TMEM87B | 0.05 | 0.01 | bslmm | 353 | 0.03 | 6.6e-05 | -6.6 | -7.8 | 4.4e-15 | -0.16 | 0.07 | 0.83 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | FBLN7 | 0.32 | 0.09 | enet | 41 | 0.26 | 1.3e-32 | -5.7 | 5.9 | 3.6e-09 | 0.17 | 0.92 | 0.08 | FALSE |
22 | The Cancer Genome Atlas | Glioblastoma Multiforme | MERTK | 0.31 | 0.15 | lasso | 2 | 0.15 | 3.4e-05 | 4.5 | 5.7 | 1.6e-08 | 0.52 | 0.04 | 0.22 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MERTK | 0.27 | 0.02 | blup | 114 | 0.05 | 1.3e-03 | 6.5 | 7.1 | 1.5e-12 | 0.74 | 0.04 | 0.34 | FALSE |
24 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MERTK | 0.18 | 0.19 | lasso | 3 | 0.19 | 9.5e-20 | -5.6 | -5.7 | 1.0e-08 | -0.05 | 0.17 | 0.83 | FALSE |