Best TWAS P=6.89e-13 · Best GWAS P=3.03e-12 conditioned to 0.528
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | HERC4 | 0.05 | 0.03 | bslmm | 408 | 0.03 | 4.2e-05 | 5.1 | -5.5 | 3.5e-08 | -0.41 | 0.57 | 0.02 | FALSE |
2 | GTEx | Esophagus Mucosa | SIRT1 | 0.06 | 0.02 | enet | 9 | 0.02 | 2.1e-02 | 2.3 | 5.2 | 2.2e-07 | 0.83 | 0.05 | 0.80 | FALSE |
3 | GTEx | Muscle Skeletal | DNAJC12 | 0.05 | 0.04 | enet | 9 | 0.02 | 2.7e-03 | 4.8 | 6.7 | 2.1e-11 | 0.74 | 0.17 | 0.78 | FALSE |
4 | GTEx | Testis | DNAJC12 | 0.22 | 0.15 | lasso | 6 | 0.12 | 5.2e-06 | 5.5 | 5.8 | 6.1e-09 | 0.51 | 0.47 | 0.26 | FALSE |
5 | GTEx | Testis | HERC4 | 0.12 | 0.08 | lasso | 2 | 0.05 | 2.0e-03 | 5.1 | 5.2 | 2.3e-07 | 0.46 | 0.17 | 0.20 | FALSE |
6 | GTEx | Whole Blood | SIRT1 | 0.07 | 0.07 | enet | 7 | 0.06 | 1.3e-06 | 6.6 | 6.7 | 1.7e-11 | 0.97 | 0.07 | 0.93 | FALSE |
7 | YFS | Blood | HERC4 | 0.03 | 0.02 | bslmm | 402 | 0.03 | 6.2e-10 | 5.1 | 6.0 | 2.7e-09 | 0.71 | 0.29 | 0.71 | FALSE |
8 | YFS | Blood | SIRT1 | 0.10 | 0.20 | lasso | 5 | 0.20 | 1.4e-63 | 6.8 | 6.8 | 8.3e-12 | 0.96 | 0.06 | 0.94 | FALSE |
9 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SIRT1 | 0.02 | 0.02 | blup | 42 | 0.01 | 6.3e-02 | 6.8 | 6.7 | 2.0e-11 | 0.95 | 0.02 | 0.75 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SIRT1 | 0.03 | 0.02 | blup | 42 | 0.03 | 3.2e-04 | 6.9 | 5.9 | 3.6e-09 | 0.88 | 0.02 | 0.91 | FALSE |
11 | The Cancer Genome Atlas | Lung Adenocarcinoma | HERC4 | 0.03 | 0.02 | blup | 77 | 0.01 | 6.7e-03 | 6.9 | 6.5 | 6.8e-11 | 0.98 | 0.02 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SIRT1 | 0.05 | 0.06 | enet | 8 | 0.06 | 1.7e-06 | 6.6 | 7.2 | 6.9e-13 | 0.94 | 0.03 | 0.97 | TRUE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | HERC4 | 0.04 | 0.02 | lasso | 4 | 0.03 | 3.1e-04 | 7.0 | 5.5 | 5.1e-08 | 0.90 | 0.03 | 0.95 | FALSE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | SIRT1 | 0.04 | 0.05 | lasso | 1 | 0.04 | 2.0e-04 | 6.9 | 6.8 | 7.3e-12 | 0.94 | 0.02 | 0.98 | FALSE |