Best TWAS P=5.1e-11 · Best GWAS P=1.54e-08 conditioned to 0.774
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RSRC1 | 0.15 | 0.17 | lasso | 4 | 0.18 | 9.7e-15 | 5.0 | -5.8 | 5.3e-09 | -0.51 | 0.26 | 0.74 | FALSE |
2 | GTEx | Adipose Subcutaneous | RP11-538P18.2 | 0.15 | 0.15 | lasso | 7 | 0.18 | 9.4e-15 | 5.0 | -5.7 | 1.0e-08 | -0.72 | 0.23 | 0.77 | FALSE |
3 | GTEx | Adipose Visceral Omentum | RSRC1 | 0.16 | 0.08 | enet | 12 | 0.09 | 2.5e-05 | 5.5 | -6.1 | 1.2e-09 | -0.89 | 0.03 | 0.97 | FALSE |
4 | GTEx | Adipose Visceral Omentum | RP11-538P18.2 | 0.23 | 0.10 | enet | 22 | 0.16 | 1.2e-08 | 5.5 | -6.1 | 1.0e-09 | -0.85 | 0.03 | 0.97 | FALSE |
5 | GTEx | Artery Aorta | RSRC1 | 0.09 | 0.04 | lasso | 5 | 0.03 | 1.4e-02 | 4.9 | -5.2 | 2.3e-07 | -0.86 | 0.09 | 0.81 | FALSE |
6 | GTEx | Artery Aorta | RP11-538P18.2 | 0.11 | 0.09 | lasso | 3 | 0.08 | 2.9e-05 | 5.1 | -5.6 | 2.7e-08 | -0.69 | 0.17 | 0.82 | FALSE |
7 | GTEx | Artery Tibial | RSRC1 | 0.13 | 0.13 | lasso | 6 | 0.11 | 3.5e-09 | 5.0 | -5.4 | 7.6e-08 | -0.59 | 0.24 | 0.76 | FALSE |
8 | GTEx | Artery Tibial | RP11-538P18.2 | 0.17 | 0.14 | enet | 24 | 0.21 | 3.7e-16 | 5.0 | -5.8 | 8.5e-09 | -0.77 | 0.30 | 0.70 | FALSE |
9 | GTEx | Breast Mammary Tissue | RSRC1 | 0.14 | 0.10 | lasso | 6 | 0.13 | 4.9e-07 | 5.0 | -6.2 | 4.5e-10 | -0.54 | 0.26 | 0.73 | FALSE |
10 | GTEx | Breast Mammary Tissue | RP11-538P18.2 | 0.17 | 0.14 | lasso | 6 | 0.16 | 1.2e-08 | 5.0 | -5.2 | 2.3e-07 | -0.57 | 0.29 | 0.71 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | RP11-538P18.2 | 0.10 | 0.08 | enet | 10 | 0.13 | 5.1e-10 | 5.0 | -5.7 | 1.4e-08 | -0.78 | 0.22 | 0.78 | FALSE |
12 | GTEx | Esophagus Gastroesophageal Junction | RP11-538P18.2 | 0.21 | 0.12 | lasso | 4 | 0.12 | 3.5e-05 | 5.0 | -6.0 | 2.7e-09 | -0.90 | 0.03 | 0.94 | FALSE |
13 | GTEx | Esophagus Mucosa | RSRC1 | 0.09 | 0.02 | enet | 20 | 0.04 | 9.3e-04 | 5.5 | -5.3 | 9.7e-08 | -0.66 | 0.04 | 0.89 | FALSE |
14 | GTEx | Esophagus Mucosa | RP11-538P18.2 | 0.12 | 0.10 | lasso | 5 | 0.14 | 1.9e-09 | 5.0 | -5.5 | 3.2e-08 | -0.62 | 0.07 | 0.93 | FALSE |
15 | GTEx | Heart Atrial Appendage | RP11-379F4.7 | 0.07 | 0.09 | enet | 11 | 0.01 | 1.4e-01 | 5.1 | 5.5 | 3.8e-08 | 0.87 | 0.08 | 0.76 | FALSE |
16 | GTEx | Lung | RP11-538P18.2 | 0.16 | 0.11 | enet | 17 | 0.17 | 6.6e-13 | 4.7 | -5.4 | 5.9e-08 | -0.67 | 0.42 | 0.57 | FALSE |
17 | GTEx | Lung | RP11-379F4.7 | 0.05 | 0.01 | lasso | 3 | 0.01 | 1.2e-01 | 5.5 | 6.6 | 5.1e-11 | 0.84 | 0.04 | 0.77 | TRUE |
18 | GTEx | Muscle Skeletal | RP11-538P18.2 | 0.09 | 0.08 | lasso | 2 | 0.05 | 1.3e-05 | 5.0 | -5.3 | 1.1e-07 | -0.61 | 0.27 | 0.72 | FALSE |
19 | GTEx | Nerve Tibial | RSRC1 | 0.10 | 0.15 | lasso | 3 | 0.12 | 9.9e-09 | 5.0 | -5.2 | 1.5e-07 | -0.53 | 0.27 | 0.73 | FALSE |
20 | GTEx | Ovary | RP11-538P18.2 | 0.23 | 0.08 | lasso | 6 | 0.13 | 4.5e-04 | 5.0 | -5.6 | 2.2e-08 | -0.82 | 0.08 | 0.21 | FALSE |
21 | GTEx | Pancreas | RP11-538P18.2 | 0.14 | 0.02 | lasso | 11 | 0.02 | 5.3e-02 | 5.1 | -5.8 | 7.8e-09 | -0.86 | 0.04 | 0.85 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-538P18.2 | 0.09 | 0.10 | enet | 13 | 0.12 | 6.8e-07 | 4.7 | -6.0 | 2.7e-09 | -0.86 | 0.05 | 0.95 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | RP11-538P18.2 | 0.13 | 0.12 | enet | 11 | 0.14 | 7.8e-12 | 5.0 | -5.7 | 1.2e-08 | -0.74 | 0.21 | 0.79 | FALSE |
24 | GTEx | Stomach | RSRC1 | 0.08 | 0.06 | lasso | 3 | 0.07 | 2.9e-04 | 5.0 | -5.6 | 2.4e-08 | -0.89 | 0.04 | 0.94 | FALSE |
25 | GTEx | Thyroid | RSRC1 | 0.07 | 0.04 | lasso | 7 | 0.02 | 8.5e-03 | 5.5 | -5.6 | 2.4e-08 | -0.95 | 0.03 | 0.96 | FALSE |
26 | GTEx | Thyroid | RP11-538P18.2 | 0.14 | 0.13 | lasso | 5 | 0.12 | 1.2e-09 | 5.0 | -5.2 | 2.3e-07 | -0.64 | 0.24 | 0.76 | FALSE |
27 | GTEx | Vagina | RP11-538P18.2 | 0.25 | 0.19 | lasso | 3 | 0.18 | 6.7e-05 | 5.4 | -5.6 | 2.7e-08 | -0.83 | 0.06 | 0.62 | FALSE |
28 | METSIM | Adipose | RSRC1 | 0.14 | 0.19 | blup | 532 | 0.21 | 6.0e-31 | 5.0 | -5.5 | 3.4e-08 | -0.55 | 0.27 | 0.73 | FALSE |
29 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RSRC1 | 0.05 | 0.03 | blup | 154 | 0.01 | 7.9e-03 | 5.0 | -6.0 | 1.8e-09 | -0.83 | 0.08 | 0.68 | FALSE |