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chr2:16,998,604-18,537,483
Best TWAS P=1.36e-19 · Best GWAS P=1.21e-15 conditioned to 0.392
17M
17.2M
17.4M
17.6M
17.8M
18M
18.2M
18.4M
18.6M
0
5
10
15
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
RAD51AP2
0.05
0.01
blup
31
0.05
1.2e-03
-7.2
9.1
1.4e-19
0.83
0.01
0.81
TRUE
3
The Cancer Genome Atlas
Breast Invasive Carcinoma
RAD51AP2
0.01
0.01
lasso
3
0.01
3.3e-03
-7.4
7.4
1.4e-13
0.44
0.10
0.26
FALSE
2
CommonMind
Brain Pre-frontal Cortex
VSNL1
0.05
0.00
blup
505
0.02
4.1e-03
2.5
6.3
2.4e-10
0.51
0.11
0.18
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
SMC6
0.03
0.02
blup
96
0.03
1.5e-03
-3.4
-5.7
1.1e-08
-0.29
0.15
0.12
FALSE
1
CommonMind
Brain Pre-frontal Cortex
RAD51AP2
0.11
0.09
bslmm
416
0.06
2.5e-08
-7.3
5.6
2.2e-08
0.49
0.34
0.66
FALSE