Best TWAS P=1.08e-08 · Best GWAS P=2.78e-09 conditioned to 0.446
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | EXOC4 | 0.13 | 0.05 | enet | 15 | 0.04 | 5.8e-04 | -3.8 | 5.1 | 3.0e-07 | -0.13 | 0.53 | 0.04 | FALSE |
2 | GTEx | Esophagus Mucosa | EXOC4 | 0.22 | 0.13 | enet | 25 | 0.18 | 2.0e-12 | -3.9 | 5.2 | 1.8e-07 | -0.20 | 0.98 | 0.01 | TRUE |
3 | GTEx | Heart Atrial Appendage | AKR1B1 | 0.22 | 0.21 | lasso | 4 | 0.19 | 6.9e-09 | -5.6 | 5.6 | 2.4e-08 | -0.83 | 0.03 | 0.97 | FALSE |
4 | GTEx | Heart Left Ventricle | AKR1B1 | 0.25 | 0.08 | lasso | 7 | 0.05 | 8.5e-04 | -5.6 | 5.7 | 1.1e-08 | -0.90 | 0.02 | 0.97 | TRUE |
5 | The Cancer Genome Atlas | Colon Adenocarcinoma | AKR1B15 | 0.10 | 0.12 | lasso | 2 | 0.12 | 2.0e-07 | -5.6 | -5.6 | 2.0e-08 | 0.93 | 0.01 | 0.99 | FALSE |
6 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1B15 | 0.07 | 0.08 | lasso | 2 | 0.08 | 2.3e-05 | -5.6 | -5.6 | 2.0e-08 | 0.93 | 0.02 | 0.97 | FALSE |
7 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | AKR1B15 | 0.18 | 0.12 | blup | 64 | 0.14 | 4.5e-07 | -5.6 | -5.7 | 1.6e-08 | 0.88 | 0.01 | 0.99 | FALSE |
8 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | AKR1B15 | 0.07 | 0.05 | blup | 66 | 0.06 | 4.5e-07 | -5.2 | -5.6 | 1.8e-08 | 0.91 | 0.02 | 0.98 | FALSE |
9 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | AKR1B15 | 0.31 | 0.22 | lasso | 2 | 0.20 | 7.7e-09 | -5.6 | -5.5 | 3.4e-08 | 0.93 | 0.01 | 0.99 | FALSE |
10 | The Cancer Genome Atlas | Rectum Adenocarcinoma | AKR1B15 | 0.37 | 0.21 | lasso | 3 | 0.21 | 1.2e-05 | -5.6 | -5.6 | 1.7e-08 | 0.94 | 0.01 | 0.95 | FALSE |
11 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | AKR1B10 | 0.11 | 0.14 | lasso | 1 | 0.13 | 2.4e-05 | -5.6 | -5.6 | 2.7e-08 | 0.91 | 0.02 | 0.95 | FALSE |