Best TWAS P=5.58e-18 · Best GWAS P=2.38e-15 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | NRXN2 | 0.11 | 0.05 | enet | 21 | 0.05 | 3.4e-05 | 6.1 | 6.0 | 1.6e-09 | 0.75 | 0.52 | 0.47 | TRUE |
2 | GTEx | Artery Tibial | NRXN2 | 0.17 | 0.12 | lasso | 5 | 0.12 | 6.9e-10 | 6.1 | 5.9 | 3.3e-09 | 0.80 | 0.82 | 0.18 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | NRXN2 | 0.15 | 0.05 | lasso | 4 | 0.06 | 2.0e-05 | 6.1 | 6.5 | 7.0e-11 | 0.84 | 0.09 | 0.90 | TRUE |
4 | GTEx | Muscle Skeletal | VEGFB | 0.19 | 0.00 | enet | 31 | 0.04 | 1.7e-04 | 7.3 | -5.4 | 5.2e-08 | -0.56 | 0.07 | 0.32 | TRUE |
5 | GTEx | Nerve Tibial | NRXN2 | 0.08 | 0.05 | lasso | 4 | 0.07 | 2.0e-05 | 5.9 | 5.7 | 1.4e-08 | 0.76 | 0.60 | 0.30 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | NRXN2 | 0.10 | 0.07 | enet | 6 | 0.05 | 7.8e-04 | 6.1 | 6.1 | 8.2e-10 | 0.74 | 0.44 | 0.44 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | NRXN2 | 0.11 | 0.05 | enet | 27 | 0.08 | 7.0e-07 | 6.1 | 5.9 | 2.9e-09 | 0.73 | 0.44 | 0.56 | FALSE |
8 | GTEx | Spleen | NRXN2 | 0.46 | 0.12 | lasso | 5 | 0.10 | 1.3e-03 | 6.1 | 5.9 | 3.0e-09 | 0.74 | 0.32 | 0.08 | FALSE |
9 | ROSMAP | Brain Pre-frontal Cortex | OVOL1 | 0.16 | 0.24 | lasso | 2 | 0.24 | 1.3e-30 | 5.2 | 5.2 | 1.5e-07 | 0.08 | 0.00 | 1.00 | TRUE |
10 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NRXN2 | 0.01 | 0.02 | lasso | 3 | 0.01 | 5.1e-04 | 6.0 | 6.0 | 1.6e-09 | 0.75 | 0.09 | 0.31 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SLC22A12 | 0.02 | 0.02 | blup | 38 | 0.02 | 4.3e-03 | 7.8 | 8.6 | 5.6e-18 | 0.93 | 0.01 | 0.88 | TRUE |
12 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SLC22A12 | 0.05 | 0.02 | blup | 38 | 0.03 | 6.3e-03 | 5.6 | 8.0 | 1.2e-15 | 0.92 | 0.01 | 0.64 | FALSE |
13 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SLC22A11 | 0.06 | 0.03 | blup | 42 | 0.04 | 1.2e-03 | 7.2 | -8.2 | 2.5e-16 | -0.72 | 0.06 | 0.52 | TRUE |
14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC22A11 | 0.05 | 0.03 | lasso | 5 | 0.02 | 2.8e-03 | 7.3 | -7.5 | 6.3e-14 | -0.37 | 0.06 | 0.14 | TRUE |