Best TWAS P=3.78e-29 · Best GWAS P=6.62e-29 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CELSR2 | 0.03 | 0.00 | lasso | 10 | 0.01 | 1.5e-02 | -8.27 | 7.2 | 5.1e-13 | -0.58 | 0.10 | 0.33 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | PSRC1 | 0.20 | 0.04 | lasso | 8 | 0.13 | 4.8e-16 | 2.66 | -6.9 | 5.1e-12 | 0.63 | 0.01 | 0.99 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | GPSM2 | 0.12 | 0.00 | enet | 24 | 0.01 | 5.6e-02 | -0.38 | 5.3 | 1.4e-07 | -0.39 | 0.05 | 0.43 | FALSE |
4 | GTEx | Esophagus Mucosa | PSRC1 | 0.18 | 0.14 | lasso | 3 | 0.14 | 2.4e-09 | -10.94 | -11.0 | 5.5e-28 | 0.97 | 0.01 | 0.99 | FALSE |
5 | GTEx | Liver | CELSR2 | 0.39 | 0.36 | lasso | 1 | 0.35 | 1.0e-10 | -10.94 | -10.9 | 7.1e-28 | 1.00 | 0.01 | 0.99 | FALSE |
6 | GTEx | Liver | ATXN7L2 | 0.39 | 0.04 | lasso | 12 | 0.21 | 1.3e-06 | -2.23 | -7.6 | 3.7e-14 | 0.69 | 0.09 | 0.74 | FALSE |
7 | GTEx | Muscle Skeletal | CELSR2 | 0.41 | 0.31 | lasso | 4 | 0.30 | 2.4e-30 | -10.94 | -10.8 | 2.7e-27 | 1.00 | 0.02 | 0.98 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | CELSR2 | 0.18 | 0.05 | lasso | 6 | 0.06 | 8.1e-06 | -9.36 | -8.1 | 4.4e-16 | 0.75 | 0.01 | 0.97 | FALSE |
9 | GTEx | Whole Blood | PSRC1 | 0.14 | 0.04 | lasso | 3 | 0.03 | 6.9e-04 | -11.14 | -11.2 | 3.8e-29 | 0.99 | 0.00 | 1.00 | TRUE |
10 | ROSMAP | Brain Pre-frontal Cortex | PSRC1 | 0.33 | 0.21 | bslmm | 430 | 0.26 | 1.2e-32 | -10.94 | -9.3 | 1.2e-20 | 0.82 | 0.00 | 1.00 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | CELSR2 | 0.25 | 0.21 | lasso | 6 | 0.23 | 4.9e-29 | -10.94 | -10.9 | 9.1e-28 | 0.96 | 0.00 | 1.00 | FALSE |
12 | YFS | Blood | PSRC1 | 0.25 | 0.18 | enet | 32 | 0.24 | 1.6e-76 | -10.94 | -9.5 | 2.4e-21 | 0.87 | 0.00 | 1.00 | FALSE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PSRC1 | 0.03 | 0.00 | blup | 49 | 0.02 | 5.7e-05 | -9.36 | -8.7 | 4.3e-18 | 0.80 | 0.02 | 0.92 | FALSE |
14 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | PSRC1 | 0.14 | 0.04 | enet | 13 | 0.07 | 2.7e-04 | -11.04 | -8.6 | 1.3e-17 | 0.73 | 0.01 | 0.82 | FALSE |
15 | The Cancer Genome Atlas | Colon Adenocarcinoma | CELSR2 | 0.12 | 0.00 | enet | 21 | 0.04 | 3.0e-03 | -11.14 | -6.2 | 4.5e-10 | 0.58 | 0.00 | 0.76 | FALSE |
16 | The Cancer Genome Atlas | Colon Adenocarcinoma | PSRC1 | 0.07 | 0.06 | lasso | 1 | 0.04 | 1.8e-03 | -9.36 | -9.4 | 7.7e-21 | 0.75 | 0.01 | 0.83 | FALSE |
17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PSRC1 | 0.14 | 0.05 | enet | 6 | 0.08 | 7.5e-09 | 1.28 | -5.6 | 1.9e-08 | 0.50 | 0.20 | 0.51 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PSRC1 | 0.12 | 0.11 | lasso | 4 | 0.09 | 4.5e-06 | -10.98 | -10.9 | 1.2e-27 | 0.92 | 0.00 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MYBPHL | 0.09 | 0.07 | blup | 46 | 0.06 | 5.7e-04 | -0.92 | -7.0 | 2.3e-12 | 0.55 | 0.03 | 0.48 | FALSE |
20 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PSRC1 | 0.16 | 0.20 | lasso | 3 | 0.19 | 3.7e-09 | -11.00 | -11.1 | 2.2e-28 | 0.95 | 0.01 | 0.99 | FALSE |
21 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | SORT1 | 0.23 | 0.16 | lasso | 4 | 0.16 | 4.6e-08 | -11.14 | -11.2 | 4.3e-29 | 0.94 | 0.00 | 1.00 | FALSE |
22 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PSRC1 | 0.07 | 0.03 | enet | 8 | 0.05 | 3.4e-04 | -11.04 | -8.4 | 3.2e-17 | 0.77 | 0.00 | 0.93 | FALSE |
23 | The Cancer Genome Atlas | Soft Tissue Sarcoma | PSRC1 | 0.09 | 0.00 | blup | 49 | 0.02 | 3.1e-02 | -4.79 | -7.1 | 1.4e-12 | 0.67 | 0.01 | 0.36 | FALSE |
24 | The Cancer Genome Atlas | Stomach Adenocarcinoma | PSRC1 | 0.12 | 0.03 | enet | 6 | 0.08 | 1.5e-06 | -10.94 | -7.8 | 4.6e-15 | 0.77 | 0.00 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SORT1 | 0.04 | 0.01 | blup | 60 | 0.03 | 4.4e-03 | -10.94 | -7.8 | 7.3e-15 | 0.63 | 0.01 | 0.75 | FALSE |