Best TWAS P=3.51e-08 · Best GWAS P=4.68e-08 conditioned to 0.183
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ZNF646 | 0.04 | 0.06 | lasso | 7 | 0.04 | 4.5e-06 | -5.3 | 5.4 | 5.2e-08 | -0.93 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Visceral Omentum | KAT8 | 0.07 | 0.02 | lasso | 5 | 0.02 | 4.0e-02 | -5.3 | 5.5 | 3.5e-08 | -0.87 | 0.02 | 0.94 | TRUE |
3 | GTEx | Artery Aorta | KAT8 | 0.23 | 0.20 | lasso | 4 | 0.20 | 2.7e-11 | -5.3 | 5.3 | 9.2e-08 | -0.90 | 0.02 | 0.98 | FALSE |
4 | GTEx | Artery Coronary | KAT8 | 0.22 | 0.19 | lasso | 2 | 0.19 | 6.6e-07 | -5.3 | 5.3 | 1.2e-07 | -0.89 | 0.02 | 0.96 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | KAT8 | 0.12 | 0.23 | lasso | 3 | 0.18 | 2.9e-05 | -5.3 | 5.3 | 1.2e-07 | -0.92 | 0.02 | 0.90 | FALSE |
6 | GTEx | Brain Cerebellum | KAT8 | 0.21 | 0.01 | lasso | 9 | 0.05 | 1.4e-02 | -5.3 | 5.3 | 1.3e-07 | -0.79 | 0.03 | 0.88 | FALSE |
7 | GTEx | Brain Cortex | KAT8 | 0.14 | 0.14 | lasso | 3 | 0.10 | 8.9e-04 | -4.8 | 5.3 | 1.3e-07 | -0.93 | 0.03 | 0.86 | FALSE |
8 | GTEx | Brain Frontal Cortex BA9 | KAT8 | 0.16 | 0.20 | lasso | 1 | 0.17 | 2.6e-05 | -5.2 | 5.2 | 2.6e-07 | -0.91 | 0.02 | 0.92 | FALSE |
9 | GTEx | Heart Atrial Appendage | KAT8 | 0.12 | 0.02 | lasso | 4 | 0.01 | 1.6e-01 | -5.1 | 5.3 | 1.3e-07 | -0.69 | 0.05 | 0.62 | FALSE |
10 | GTEx | Liver | VKORC1 | 0.22 | 0.20 | lasso | 5 | 0.22 | 1.1e-06 | -5.1 | 5.3 | 1.2e-07 | -0.97 | 0.02 | 0.98 | FALSE |
11 | GTEx | Ovary | KAT8 | 0.16 | 0.09 | lasso | 4 | 0.06 | 1.2e-02 | -5.3 | 5.2 | 2.0e-07 | -0.86 | 0.02 | 0.83 | FALSE |
12 | GTEx | Whole Blood | HSD3B7 | 0.06 | 0.06 | lasso | 4 | 0.06 | 2.6e-06 | -5.5 | -5.5 | 4.9e-08 | 0.99 | 0.02 | 0.98 | FALSE |
13 | GTEx | Whole Blood | ZNF668 | 0.05 | 0.06 | lasso | 3 | 0.06 | 5.9e-06 | -5.2 | -5.2 | 2.5e-07 | 0.87 | 0.02 | 0.98 | FALSE |
14 | NTR | Blood | BCKDK | 0.01 | 0.00 | bslmm | 242 | 0.01 | 2.5e-03 | -5.1 | -5.3 | 1.2e-07 | 0.79 | 0.02 | 0.94 | FALSE |
15 | ROSMAP | Brain Pre-frontal Cortex | KAT8 | 0.13 | 0.16 | lasso | 5 | 0.16 | 4.2e-20 | -5.2 | 5.1 | 2.8e-07 | -0.88 | 0.02 | 0.98 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | ZNF646 | 0.06 | 0.01 | bslmm | 233 | 0.01 | 1.1e-02 | -5.3 | 5.4 | 5.2e-08 | -0.84 | 0.02 | 0.98 | FALSE |
17 | YFS | Blood | ZNF668 | 0.10 | 0.12 | bslmm | 232 | 0.12 | 1.5e-36 | -5.1 | -5.2 | 1.8e-07 | 0.95 | 0.02 | 0.98 | FALSE |
18 | The Cancer Genome Atlas | Glioblastoma Multiforme | MYST1 | 0.18 | 0.07 | blup | 35 | 0.11 | 4.2e-04 | -5.1 | 5.3 | 1.2e-07 | -0.91 | 0.02 | 0.89 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | VKORC1 | 0.03 | 0.04 | lasso | 3 | 0.04 | 3.2e-05 | -5.3 | 5.4 | 8.1e-08 | -0.95 | 0.02 | 0.98 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ZNF668 | 0.02 | 0.02 | blup | 32 | 0.02 | 2.9e-03 | -5.2 | -5.4 | 8.2e-08 | 0.93 | 0.01 | 0.94 | FALSE |
21 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZNF668 | 0.02 | 0.01 | enet | 8 | 0.02 | 3.1e-03 | -5.1 | -5.2 | 1.7e-07 | 0.88 | 0.02 | 0.82 | FALSE |
22 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MYST1 | 0.03 | 0.05 | blup | 34 | 0.03 | 2.1e-03 | -5.1 | 5.3 | 1.0e-07 | -0.92 | 0.02 | 0.92 | FALSE |
23 | The Cancer Genome Atlas | Rectum Adenocarcinoma | MYST1 | 0.13 | 0.05 | blup | 35 | 0.06 | 1.9e-02 | -5.3 | 5.2 | 1.9e-07 | -0.90 | 0.01 | 0.62 | FALSE |
24 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | MYST1 | 0.13 | 0.06 | blup | 34 | 0.12 | 6.8e-05 | -5.1 | 5.2 | 2.5e-07 | -0.89 | 0.02 | 0.95 | FALSE |