Best TWAS P=1.43e-09 · Best GWAS P=1.58e-10 conditioned to 0.00562
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CERS2 | 0.04 | 0.03 | bslmm | 307 | 0.02 | 1.7e-03 | 4.9 | 5.4 | 7.4e-08 | 0.71 | 0.43 | 0.39 | FALSE |
2 | GTEx | Brain Cortex | CTSS | 0.17 | 0.06 | lasso | 6 | 0.04 | 2.7e-02 | 5.9 | 5.3 | 1.1e-07 | 0.75 | 0.03 | 0.76 | FALSE |
3 | GTEx | Brain Hippocampus | ARNT | 0.14 | 0.09 | enet | 14 | 0.08 | 5.3e-03 | 5.3 | 5.3 | 1.4e-07 | 0.84 | 0.02 | 0.77 | FALSE |
4 | GTEx | Brain Hypothalamus | RP11-316M1.12 | 0.14 | 0.03 | lasso | 6 | 0.02 | 9.9e-02 | 4.9 | -5.1 | 2.6e-07 | -0.81 | 0.10 | 0.11 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | RP11-54A4.2 | 0.07 | 0.01 | enet | 2 | 0.03 | 7.4e-02 | -5.2 | -5.4 | 8.4e-08 | -0.74 | 0.04 | 0.25 | FALSE |
6 | GTEx | Esophagus Muscularis | CTSS | 0.05 | 0.04 | enet | 12 | 0.06 | 1.2e-04 | 5.0 | 6.1 | 1.4e-09 | 0.71 | 0.11 | 0.83 | TRUE |
7 | GTEx | Heart Atrial Appendage | CTSK | 0.13 | 0.02 | enet | 8 | 0.05 | 2.1e-03 | 3.3 | -5.3 | 9.9e-08 | -0.70 | 0.05 | 0.87 | FALSE |
8 | GTEx | Muscle Skeletal | CTSS | 0.04 | 0.01 | enet | 13 | 0.03 | 1.4e-03 | 6.0 | 5.4 | 8.7e-08 | 0.81 | 0.06 | 0.89 | FALSE |
9 | GTEx | Pituitary | CTSK | 0.14 | 0.14 | lasso | 2 | 0.06 | 1.6e-02 | 5.3 | 5.2 | 1.9e-07 | 0.74 | 0.06 | 0.62 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | ANXA9 | 0.11 | 0.12 | lasso | 2 | 0.13 | 2.0e-07 | -4.6 | 5.2 | 2.2e-07 | 0.58 | 0.44 | 0.32 | FALSE |
11 | GTEx | Thyroid | ARNT | 0.08 | 0.10 | lasso | 10 | 0.10 | 7.8e-08 | -5.3 | 5.7 | 1.2e-08 | 0.91 | 0.02 | 0.98 | FALSE |
12 | NTR | Blood | CTSK | 0.03 | 0.02 | enet | 22 | 0.02 | 8.1e-08 | 5.0 | 5.2 | 2.1e-07 | 0.59 | 0.68 | 0.32 | FALSE |
13 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PPIAL4C | 0.06 | 0.03 | enet | 6 | 0.04 | 1.3e-04 | -4.4 | -5.6 | 1.8e-08 | -0.03 | 0.00 | 0.13 | TRUE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CTSS | 0.02 | 0.01 | enet | 4 | 0.01 | 2.8e-03 | 3.8 | 5.3 | 1.2e-07 | 0.73 | 0.03 | 0.84 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CTSS | 0.04 | 0.01 | enet | 4 | 0.03 | 4.7e-04 | 5.0 | 5.2 | 1.9e-07 | 0.67 | 0.03 | 0.92 | FALSE |
16 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CTSS | 0.16 | 0.08 | enet | 8 | 0.07 | 1.6e-05 | -4.6 | 5.8 | 6.5e-09 | 0.69 | 0.01 | 0.96 | FALSE |