Best TWAS P=1.49e-11 · Best GWAS P=9.13e-13 conditioned to 0.0346
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -5.4 | -5.4 | 6.8e-08 | -0.13 | 0.03 | 0.97 | FALSE |
2 | GTEx | Adipose Subcutaneous | UBXN2A | 0.06 | 0.04 | lasso | 5 | 0.04 | 5.2e-04 | -5.5 | -5.1 | 2.8e-07 | -0.73 | 0.28 | 0.70 | FALSE |
3 | GTEx | Adipose Visceral Omentum | UBXN2A | 0.10 | 0.08 | enet | 29 | 0.03 | 9.8e-03 | -5.8 | -5.8 | 5.4e-09 | -0.67 | 0.07 | 0.91 | FALSE |
4 | GTEx | Artery Tibial | UBXN2A | 0.12 | 0.06 | enet | 24 | 0.09 | 1.5e-07 | -2.9 | -5.6 | 2.7e-08 | -0.72 | 0.78 | 0.22 | FALSE |
5 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -5.4 | 6.3 | 2.4e-10 | 0.08 | 0.05 | 0.93 | TRUE |
6 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -5.4 | 6.0 | 1.6e-09 | 0.11 | 0.04 | 0.90 | FALSE |
7 | GTEx | Colon Transverse | UBXN2A | 0.11 | 0.01 | enet | 8 | 0.03 | 8.7e-03 | -5.4 | -5.8 | 5.7e-09 | -0.75 | 0.08 | 0.69 | FALSE |
8 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -4.4 | -5.9 | 2.8e-09 | -0.30 | 0.06 | 0.28 | FALSE |
9 | GTEx | Lung | UBXN2A | 0.09 | 0.06 | enet | 7 | 0.07 | 6.1e-06 | -3.1 | -5.2 | 1.9e-07 | -0.72 | 0.29 | 0.70 | FALSE |
10 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -4.7 | 5.8 | 7.1e-09 | 0.15 | 0.04 | 0.96 | FALSE |
11 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -4.7 | 5.2 | 1.5e-07 | 0.15 | 0.04 | 0.94 | FALSE |
12 | GTEx | Small Intestine Terminal Ileum | UBXN2A | 0.18 | 0.08 | enet | 33 | 0.16 | 2.5e-04 | -5.8 | -5.7 | 1.2e-08 | -0.84 | 0.03 | 0.90 | FALSE |
13 | GTEx | Spleen | UBXN2A | 0.31 | 0.11 | enet | 19 | 0.17 | 4.1e-05 | 6.5 | -6.8 | 1.5e-11 | -0.80 | 0.03 | 0.93 | TRUE |
14 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -5.3 | -5.3 | 8.9e-08 | -0.09 | 0.05 | 0.95 | FALSE |
15 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -5.7 | -5.5 | 3.1e-08 | -0.12 | 0.02 | 0.98 | FALSE |
16 | GTEx | Whole Blood | UBXN2A | 0.17 | 0.07 | lasso | 8 | 0.09 | 2.1e-08 | -3.1 | -6.2 | 5.6e-10 | -0.84 | 0.04 | 0.96 | FALSE |
17 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -5.3 | -5.2 | 2.4e-07 | -0.13 | 0.03 | 0.97 | FALSE |
18 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -5.7 | 6.2 | 6.5e-10 | 0.13 | 0.03 | 0.97 | FALSE |
19 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -4.6 | 5.3 | 1.2e-07 | 0.05 | 0.02 | 0.56 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -4.8 | 5.8 | 8.0e-09 | 0.07 | 0.06 | 0.88 | FALSE |