TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Forced expiratory volume in 1-second (FEV1), Best measure
:
←
→
chr4:57,080,198-58,531,645
Best TWAS P=3.77e-09 · Best GWAS P=3.12e-09 conditioned to 1
57M
57.2M
57.4M
57.6M
57.8M
58M
58.2M
58.4M
58.6M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
C4orf14
0.03
0.04
lasso
3
0.04
1.9e-05
-5.9
-5.9
3.8e-09
0.99
0.00
0.99
TRUE
6
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
REST
0.04
0.01
lasso
5
0.02
7.8e-04
-5.0
-5.9
4.0e-09
0.77
0.11
0.49
FALSE
1
GTEx
Artery Aorta
NOA1
0.17
0.06
lasso
4
0.06
3.5e-04
5.3
-5.7
9.9e-09
0.90
0.01
0.98
FALSE
3
GTEx
Muscle Skeletal
REST
0.05
0.01
enet
9
0.02
3.9e-03
-4.0
-5.6
2.5e-08
0.85
0.02
0.96
FALSE
4
METSIM
Adipose
RP11-738E22.3
0.07
0.04
lasso
6
0.05
7.7e-08
-4.9
5.5
5.1e-08
-0.73
0.30
0.70
FALSE
2
GTEx
Colon Transverse
REST
0.26
0.04
lasso
9
0.10
1.9e-05
-4.1
-5.3
1.3e-07
0.64
0.12
0.71
FALSE