Best TWAS P=2.16e-18 · Best GWAS P=5.84e-23 conditioned to 0.0119
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | ERCC6L2 | 0.22 | 0.18 | enet | 39 | 0.18 | 5.2e-14 | 4.7 | 5.3 | 1.5e-07 | -0.05 | 1.00 | 0.00 | FALSE |
2 | GTEx | Artery Tibial | RP11-435O5.5 | 0.09 | 0.04 | lasso | 2 | 0.02 | 7.3e-03 | 8.6 | -8.4 | 3.8e-17 | -0.44 | 0.25 | 0.06 | FALSE |
3 | GTEx | Breast Mammary Tissue | CDC14B | 0.16 | 0.02 | enet | 21 | 0.02 | 3.7e-02 | 6.2 | -6.2 | 5.2e-10 | -0.01 | 0.02 | 0.95 | FALSE |
4 | GTEx | Breast Mammary Tissue | ERCC6L2 | 0.17 | 0.02 | lasso | 4 | 0.03 | 1.2e-02 | 4.7 | 5.4 | 6.2e-08 | -0.03 | 0.28 | 0.03 | FALSE |
5 | GTEx | Cells EBV-transformed lymphocytes | AAED1 | 0.17 | 0.02 | lasso | 3 | 0.04 | 2.4e-02 | 6.1 | 5.5 | 3.4e-08 | 0.00 | 0.03 | 0.65 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | ERCC6L2 | 0.19 | 0.02 | enet | 34 | 0.16 | 4.1e-12 | 4.6 | 5.4 | 8.3e-08 | 0.02 | 0.98 | 0.00 | FALSE |
7 | GTEx | Esophagus Muscularis | ERCC6L2 | 0.15 | 0.10 | lasso | 6 | 0.08 | 8.8e-06 | 4.8 | 5.5 | 4.2e-08 | -0.01 | 0.87 | 0.01 | TRUE |
8 | GTEx | Heart Atrial Appendage | ERCC6L2 | 0.16 | 0.05 | enet | 22 | 0.10 | 4.6e-05 | 4.8 | 5.2 | 2.6e-07 | 0.02 | 0.59 | 0.02 | FALSE |
9 | GTEx | Heart Atrial Appendage | RP11-435O5.4 | 0.18 | 0.00 | lasso | 5 | 0.00 | 6.2e-01 | 3.7 | -6.0 | 1.9e-09 | 0.07 | 0.07 | 0.06 | TRUE |
10 | GTEx | Liver | PTCH1 | 0.25 | 0.06 | enet | 11 | 0.03 | 4.9e-02 | 9.8 | 8.7 | 2.2e-18 | 0.91 | 0.01 | 0.94 | TRUE |
11 | GTEx | Nerve Tibial | HSD17B3 | 0.14 | 0.00 | enet | 20 | 0.00 | 2.4e-01 | 6.0 | 5.6 | 1.8e-08 | 0.04 | 0.04 | 0.74 | FALSE |
12 | GTEx | Nerve Tibial | ZNF367 | 0.10 | 0.05 | lasso | 3 | 0.02 | 7.9e-03 | 6.1 | 5.9 | 4.9e-09 | 0.04 | 0.04 | 0.94 | FALSE |
13 | GTEx | Spleen | PTCH1 | 0.33 | 0.08 | lasso | 8 | 0.18 | 1.9e-05 | -1.1 | 6.7 | 2.7e-11 | 0.64 | 0.05 | 0.76 | FALSE |
14 | GTEx | Testis | HABP4 | 0.19 | 0.22 | lasso | 9 | 0.21 | 1.1e-09 | 5.9 | 6.0 | 2.0e-09 | 0.02 | 0.04 | 0.96 | FALSE |
15 | GTEx | Testis | C9orf3 | 0.15 | 0.00 | enet | 18 | 0.00 | 2.4e-01 | -1.5 | -5.2 | 2.2e-07 | -0.10 | 0.06 | 0.11 | TRUE |
16 | GTEx | Thyroid | CDC14B | 0.15 | 0.10 | lasso | 5 | 0.08 | 5.3e-07 | 5.9 | -5.7 | 1.0e-08 | -0.03 | 0.06 | 0.94 | FALSE |
17 | NTR | Blood | PTCH1 | 0.04 | 0.02 | blup | 433 | 0.02 | 4.1e-08 | 8.8 | 6.7 | 1.5e-11 | 0.64 | 0.02 | 0.98 | FALSE |
18 | NTR | Blood | ZNF169 | 0.02 | 0.00 | lasso | 6 | 0.00 | 1.1e-02 | -7.7 | -5.4 | 7.9e-08 | 0.08 | 0.02 | 0.76 | TRUE |
19 | YFS | Blood | HABP4 | 0.08 | 0.09 | enet | 24 | 0.11 | 5.9e-34 | 5.3 | -5.5 | 3.6e-08 | -0.04 | 0.74 | 0.26 | FALSE |
20 | YFS | Blood | PTCH1 | 0.09 | 0.05 | lasso | 8 | 0.05 | 1.2e-15 | 8.8 | 8.4 | 6.7e-17 | 0.95 | 0.02 | 0.98 | FALSE |
21 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CDC14B | 0.02 | 0.01 | lasso | 1 | 0.01 | 3.0e-03 | 6.1 | -6.1 | 1.4e-09 | -0.03 | 0.02 | 0.74 | FALSE |
22 | The Cancer Genome Atlas | Glioblastoma Multiforme | CDC14B | 0.16 | 0.17 | blup | 41 | 0.19 | 2.6e-06 | 6.1 | -5.7 | 1.3e-08 | 0.00 | 0.02 | 0.97 | FALSE |
23 | The Cancer Genome Atlas | Glioblastoma Multiforme | HABP4 | 0.08 | 0.06 | blup | 44 | 0.05 | 1.6e-02 | 5.9 | -6.2 | 7.7e-10 | -0.05 | 0.02 | 0.59 | FALSE |
24 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HABP4 | 0.02 | 0.02 | blup | 44 | 0.02 | 7.1e-03 | 6.1 | 6.0 | 1.7e-09 | 0.02 | 0.02 | 0.78 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CDC14B | 0.03 | 0.02 | blup | 42 | 0.02 | 2.1e-03 | 6.1 | -6.1 | 8.2e-10 | -0.03 | 0.02 | 0.84 | FALSE |
26 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CDC14B | 0.05 | 0.06 | lasso | 5 | 0.06 | 6.5e-07 | 6.2 | -6.0 | 2.6e-09 | -0.01 | 0.02 | 0.98 | FALSE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | HABP4 | 0.05 | 0.08 | lasso | 5 | 0.08 | 6.9e-09 | 6.3 | -6.3 | 3.1e-10 | -0.04 | 0.02 | 0.98 | TRUE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PTCH1 | 0.02 | 0.01 | blup | 54 | 0.02 | 1.1e-03 | 7.9 | -6.3 | 3.8e-10 | -0.19 | 0.06 | 0.04 | TRUE |
29 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CDC14B | 0.08 | 0.02 | blup | 41 | 0.04 | 1.0e-03 | 3.9 | -5.6 | 2.1e-08 | -0.05 | 0.02 | 0.69 | FALSE |
30 | The Cancer Genome Atlas | Thyroid Carcinoma | CDC14B | 0.05 | 0.07 | blup | 42 | 0.08 | 4.8e-08 | 6.2 | -6.0 | 2.2e-09 | -0.02 | 0.02 | 0.98 | FALSE |