Best TWAS P=3.03e-09 · Best GWAS P=2.43e-09 conditioned to 0.111
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Hypothalamus | RP11-159N11.4 | 0.44 | 0.06 | lasso | 19 | 0.03 | 7.5e-02 | 3.8 | 5.2 | 2.5e-07 | -0.20 | 0.10 | 0.29 | FALSE |
2 | GTEx | Heart Left Ventricle | TTC12 | 0.39 | 0.24 | enet | 36 | 0.38 | 2.5e-21 | 5.4 | 5.6 | 1.9e-08 | -0.16 | 0.06 | 0.94 | FALSE |
3 | GTEx | Uterus | NCAM1 | 0.41 | -0.01 | lasso | 11 | -0.01 | 5.9e-01 | 3.8 | 5.6 | 2.1e-08 | -0.21 | 0.08 | 0.07 | FALSE |
4 | METSIM | Adipose | ANKK1 | 0.16 | 0.11 | enet | 13 | 0.16 | 9.8e-23 | -4.3 | -5.9 | 3.0e-09 | 0.24 | 0.90 | 0.09 | TRUE |
5 | YFS | Blood | ANKK1 | 0.04 | 0.03 | lasso | 3 | 0.03 | 2.9e-09 | -4.7 | -5.2 | 1.6e-07 | 0.19 | 0.76 | 0.24 | FALSE |
6 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ANKK1 | 0.04 | 0.02 | blup | 66 | 0.03 | 5.0e-04 | 4.3 | 5.7 | 1.2e-08 | -0.22 | 0.03 | 0.90 | FALSE |
7 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ANKK1 | 0.04 | 0.03 | blup | 67 | 0.04 | 6.3e-05 | 4.3 | -5.3 | 1.4e-07 | 0.28 | 0.08 | 0.88 | FALSE |
8 | The Cancer Genome Atlas | Lung Adenocarcinoma | DRD2 | 0.06 | 0.07 | lasso | 2 | 0.07 | 6.6e-09 | -5.1 | 5.2 | 2.6e-07 | -0.75 | 0.09 | 0.91 | TRUE |
9 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | TTC12 | 0.25 | 0.12 | blup | 48 | 0.12 | 2.4e-08 | 5.1 | 5.4 | 7.7e-08 | -0.28 | 0.03 | 0.97 | TRUE |
10 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | TTC12 | 0.36 | 0.30 | lasso | 3 | 0.29 | 6.0e-12 | 5.5 | 5.5 | 4.9e-08 | -0.21 | 0.01 | 0.99 | FALSE |
11 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TTC12 | 0.21 | 0.20 | lasso | 4 | 0.22 | 1.2e-22 | 5.5 | 5.4 | 6.2e-08 | -0.23 | 0.01 | 0.99 | FALSE |
12 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TTC12 | 0.07 | 0.06 | blup | 48 | 0.04 | 1.6e-02 | 5.1 | 5.8 | 6.0e-09 | -0.26 | 0.01 | 0.75 | FALSE |