101 significantly associated models · 32 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 22911727 | 24924438 | 2 | 2 | 7.1e-14 | 3.5e-13 | 1.0000 | 100 | KLHL29 UBXN2A |
2 | 6 | 104706579 | 106230491 | 1 | 1 | 1.2e-07 | 1.8e-07 | 0.2070 | 94 | LIN28B |
3 | 8 | 8092025 | 8794801 | 1 | 1 | 5.2e-08 | 3.3e-07 | 0.1180 | 91 | FAM86B3P |
4 | 8 | 10265712 | 11891593 | 3 | 1 | 8.9e-09 | 1.4e-07 | 0.1930 | 94 | AF131215.2 |
5 | 11 | 46917983 | 48303325 | 2 | 1 | 1.6e-07 | 1.1e-07 | 0.1890 | 94 | C1QTNF4 |
6 | 11 | 56742853 | 58178587 | 3 | 1 | 5.3e-09 | 1.3e-07 | 0.1910 | 94 | MED19 |
7 | 11 | 112135760 | 113969669 | 5 | 3 | 3.0e-09 | 2.4e-09 | 0.1110 | 93 | ANKK1 DRD2 TTC12 |
8 | 14 | 74424938 | 76089054 | 4 | 1 | 1.8e-09 | 2.9e-09 | 0.0036 | 76 | AREL1 |
9 | 15 | 77207277 | 78806023 | 1 | 1 | 1.6e-07 | 2.0e-07 | 1.0000 | 100 | LINGO1 |
10 | 17 | 42774693 | 43913030 | 7 | 1 | 9.3e-09 | 1.8e-07 | 0.0838 | 89 | PLEKHM1 |
11 | 22 | 39229593 | 40615276 | 1 | 1 | 1.0e-07 | 2.8e-07 | 0.3330 | 96 | ATF4 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Small Intestine Terminal Ileum | 2 | 0.434 | 1.9 |
GTEx | Uterus | 4 | 0.705 | 1.9 |
GTEx | Artery Coronary | 2 | 0.169 | 1.7 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.7 |
GTEx | Brain Cortex | 2 | 0.193 | 1.7 |
GTEx | Brain Hippocampus | 1 | 0.191 | 1.7 |
GTEx | Cells EBV-transformed lymphocytes | 4 | 0.281 | 1.7 |
GTEx | Heart Atrial Appendage | 1 | 0.063 | 1.7 |
GTEx | Adipose Visceral Omentum | 2 | 0.098 | 1.6 |
GTEx | Adrenal Gland | 1 | 0.069 | 1.6 |
GTEx | Brain Cerebellar Hemisphere | 0 | 0.000 | 1.6 |
GTEx | Brain Frontal Cortex BA9 | 2 | 0.216 | 1.6 |
GTEx | Brain Nucleus accumbens basal ganglia | 0 | 0.000 | 1.6 |
GTEx | Brain Putamen basal ganglia | 1 | 0.160 | 1.6 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.6 |
GTEx | Colon Sigmoid | 2 | 0.137 | 1.6 |
GTEx | Colon Transverse | 1 | 0.048 | 1.6 |
GTEx | Esophagus Gastroesophageal Junction | 1 | 0.069 | 1.6 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.6 |
GTEx | Heart Left Ventricle | 2 | 0.131 | 1.6 |
GTEx | Liver | 1 | 0.139 | 1.6 |
GTEx | Ovary | 0 | 0.000 | 1.6 |
GTEx | Pancreas | 2 | 0.123 | 1.6 |
GTEx | Pituitary | 1 | 0.090 | 1.6 |
GTEx | Prostate | 2 | 0.240 | 1.6 |
GTEx | Skin Not Sun Exposed Suprapubic | 2 | 0.081 | 1.6 |
GTEx | Spleen | 2 | 0.142 | 1.6 |
GTEx | Stomach | 1 | 0.069 | 1.6 |
GTEx | Testis | 6 | 0.190 | 1.6 |
GTEx | Vagina | 0 | 0.000 | 1.6 |
ROSMAP | Brain Pre-frontal Cortex | 3 | 0.068 | 1.6 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.6 |
GTEx | Adipose Subcutaneous | 3 | 0.086 | 1.5 |
GTEx | Artery Aorta | 2 | 0.067 | 1.5 |
GTEx | Artery Tibial | 2 | 0.053 | 1.5 |
GTEx | Brain Cerebellum | 2 | 0.101 | 1.5 |
GTEx | Brain Hypothalamus | 2 | 0.339 | 1.5 |
GTEx | Breast Mammary Tissue | 1 | 0.051 | 1.5 |
GTEx | Cells Transformed fibroblasts | 3 | 0.071 | 1.5 |
GTEx | Esophagus Mucosa | 1 | 0.030 | 1.5 |
GTEx | Lung | 1 | 0.035 | 1.5 |
GTEx | Muscle Skeletal | 5 | 0.173 | 1.5 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.5 |
GTEx | Skin Sun Exposed Lower leg | 4 | 0.110 | 1.5 |
GTEx | Thyroid | 2 | 0.050 | 1.5 |
GTEx | Whole Blood | 1 | 0.050 | 1.5 |
NTR | Blood | 0 | 0.000 | 1.5 |
CommonMind | Brain Pre-frontal Cortex | 3 | 0.056 | 1.5 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 2 | 0.097 | 1.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 2 | 0.068 | 1.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 1 | 0.022 | 1.5 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 0 | 0.000 | 1.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 0 | 0.000 | 1.5 |
GTEx | Breast Mammary Tissue (Male) | 2 | 0.168 | 1.4 |
METSIM | Adipose | 2 | 0.043 | 1.4 |
YFS | Blood | 3 | 0.065 | 1.4 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 1 | 0.023 | 1.4 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 1 | 0.024 | 1.4 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.4 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 1 | 0.063 | 1.4 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 1 | 0.075 | 1.4 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 1 | 0.078 | 1.4 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.3 |