Best TWAS P=5.81e-33 · Best GWAS P=1.38e-30 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | SEC31B | 0.13 | 0.21 | lasso | 3 | 0.20 | 4.1e-24 | -6.0 | 6.0 | 1.8e-09 | 0.05 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | SEC31B | 0.32 | 0.39 | lasso | 5 | 0.38 | 5.1e-33 | -6.0 | 6.0 | 2.6e-09 | 0.05 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Subcutaneous | RP11-179B2.2 | 0.15 | 0.08 | lasso | 6 | 0.08 | 3.2e-07 | 9.3 | 10.2 | 3.2e-24 | 0.90 | 0.02 | 0.98 | FALSE |
4 | GTEx | Adipose Visceral Omentum | SEC31B | 0.18 | 0.28 | lasso | 10 | 0.27 | 1.5e-14 | -5.4 | 5.9 | 3.7e-09 | 0.07 | 1.00 | 0.00 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP11-179B2.2 | 0.13 | 0.02 | lasso | 3 | 0.03 | 6.5e-03 | 11.5 | 11.0 | 2.4e-28 | 0.99 | 0.00 | 0.99 | FALSE |
6 | GTEx | Artery Aorta | SEC31B | 0.26 | 0.24 | lasso | 3 | 0.23 | 1.0e-12 | -6.0 | 5.6 | 2.3e-08 | 0.06 | 1.00 | 0.00 | FALSE |
7 | GTEx | Artery Aorta | RP11-179B2.2 | 0.16 | 0.11 | lasso | 2 | 0.09 | 7.6e-06 | 11.5 | 11.3 | 1.3e-29 | 0.98 | 0.00 | 1.00 | FALSE |
8 | GTEx | Artery Tibial | SEC31B | 0.25 | 0.32 | lasso | 6 | 0.33 | 1.3e-26 | -5.4 | 5.7 | 1.3e-08 | 0.07 | 1.00 | 0.00 | FALSE |
9 | GTEx | Artery Tibial | RP11-179B2.2 | 0.11 | 0.09 | lasso | 4 | 0.08 | 8.8e-07 | 11.5 | 11.3 | 1.1e-29 | 0.96 | 0.00 | 1.00 | FALSE |
10 | GTEx | Brain Cerebellum | SEC31B | 0.24 | 0.12 | enet | 52 | 0.08 | 2.0e-03 | -5.4 | 5.2 | 2.6e-07 | 0.05 | 0.63 | 0.04 | FALSE |
11 | GTEx | Brain Cerebellum | RP11-179B2.2 | 0.37 | 0.21 | lasso | 4 | 0.20 | 1.4e-06 | 11.5 | 12.0 | 5.8e-33 | 0.96 | 0.00 | 0.99 | TRUE |
12 | GTEx | Brain Cortex | SEC31B | 0.18 | 0.09 | lasso | 7 | 0.07 | 7.1e-03 | -5.4 | 5.7 | 1.1e-08 | 0.07 | 0.40 | 0.03 | FALSE |
13 | GTEx | Brain Frontal Cortex BA9 | RP11-179B2.2 | 0.22 | 0.15 | lasso | 2 | 0.11 | 7.2e-04 | 11.5 | 10.9 | 1.4e-27 | 0.98 | 0.00 | 0.97 | FALSE |
14 | GTEx | Breast Mammary Tissue | SEC31B | 0.17 | 0.26 | lasso | 5 | 0.25 | 2.9e-13 | -6.0 | 5.8 | 5.2e-09 | 0.05 | 1.00 | 0.00 | FALSE |
15 | GTEx | Breast Mammary Tissue | RP11-179B2.2 | 0.11 | 0.09 | lasso | 2 | 0.07 | 1.8e-04 | 11.5 | 10.7 | 7.4e-27 | 0.96 | 0.01 | 0.99 | FALSE |
16 | GTEx | Breast Mammary Tissue (Male) | SEC31B | 0.13 | 0.08 | lasso | 4 | 0.10 | 3.0e-03 | -6.0 | 6.0 | 2.4e-09 | 0.05 | 0.27 | 0.04 | FALSE |
17 | GTEx | Breast Mammary Tissue (Male) | RP11-179B2.2 | 0.16 | -0.01 | enet | 4 | -0.01 | 7.1e-01 | -10.8 | 11.0 | 5.9e-28 | 0.77 | 0.03 | 0.46 | FALSE |
18 | GTEx | Breast Mammary Tissue (Female) | RP11-179B2.2 | 0.19 | 0.00 | lasso | 3 | -0.01 | 5.1e-01 | 9.3 | 6.8 | 8.4e-12 | 0.65 | 0.03 | 0.44 | FALSE |
19 | GTEx | Cells EBV-transformed lymphocytes | SEC31B | 0.23 | 0.11 | enet | 13 | 0.12 | 9.2e-05 | -6.0 | 5.5 | 4.6e-08 | 0.07 | 0.75 | 0.01 | FALSE |
20 | GTEx | Cells Transformed fibroblasts | SEC31B | 0.14 | 0.19 | enet | 17 | 0.22 | 1.6e-16 | -6.0 | 5.8 | 8.5e-09 | 0.06 | 1.00 | 0.00 | FALSE |
21 | GTEx | Colon Transverse | SEC31B | 0.28 | 0.12 | lasso | 3 | 0.09 | 3.3e-05 | -6.0 | 6.0 | 1.5e-09 | 0.07 | 0.98 | 0.00 | FALSE |
22 | GTEx | Esophagus Gastroesophageal Junction | SEC31B | 0.15 | 0.21 | lasso | 4 | 0.20 | 8.0e-08 | -6.0 | 6.0 | 2.4e-09 | 0.05 | 0.96 | 0.00 | FALSE |
23 | GTEx | Esophagus Mucosa | SEC31B | 0.14 | 0.18 | lasso | 4 | 0.17 | 2.0e-11 | -6.0 | 6.0 | 2.4e-09 | 0.05 | 1.00 | 0.00 | FALSE |
24 | GTEx | Esophagus Mucosa | HIF1AN | 0.14 | 0.08 | lasso | 7 | 0.09 | 2.2e-06 | -6.1 | 6.0 | 1.9e-09 | 0.09 | 0.98 | 0.00 | FALSE |
25 | GTEx | Esophagus Muscularis | SEC31B | 0.18 | 0.19 | lasso | 4 | 0.20 | 4.5e-12 | -6.0 | 6.0 | 2.6e-09 | 0.05 | 1.00 | 0.00 | FALSE |
26 | GTEx | Esophagus Muscularis | RP11-179B2.2 | 0.15 | 0.16 | lasso | 3 | 0.16 | 8.1e-10 | 11.3 | 11.3 | 1.1e-29 | 0.98 | 0.01 | 0.99 | FALSE |
27 | GTEx | Heart Atrial Appendage | MRPL43 | 0.16 | 0.07 | lasso | 4 | 0.09 | 5.8e-05 | -4.8 | -5.6 | 2.3e-08 | -0.62 | 0.39 | 0.15 | FALSE |
28 | GTEx | Heart Left Ventricle | SEC31B | 0.09 | 0.07 | lasso | 1 | 0.04 | 2.1e-03 | -5.4 | 5.4 | 5.5e-08 | 0.08 | 0.48 | 0.02 | FALSE |
29 | GTEx | Heart Left Ventricle | RP11-179B2.2 | 0.15 | 0.18 | enet | 2 | 0.14 | 4.8e-08 | 11.5 | 11.5 | 1.4e-30 | 1.00 | 0.00 | 1.00 | FALSE |
30 | GTEx | Lung | SEC31B | 0.19 | 0.21 | enet | 18 | 0.20 | 2.0e-15 | -5.4 | 5.7 | 1.6e-08 | 0.07 | 1.00 | 0.00 | FALSE |
31 | GTEx | Lung | RP11-179B2.2 | 0.18 | 0.12 | lasso | 3 | 0.12 | 1.7e-09 | 11.5 | 11.0 | 3.8e-28 | 0.99 | 0.00 | 1.00 | FALSE |
32 | GTEx | Muscle Skeletal | SEC31B | 0.08 | 0.09 | lasso | 5 | 0.08 | 4.9e-08 | -5.4 | 5.3 | 1.2e-07 | 0.07 | 1.00 | 0.00 | FALSE |
33 | GTEx | Muscle Skeletal | HIF1AN | 0.05 | 0.06 | lasso | 1 | 0.05 | 1.6e-05 | -6.0 | -6.0 | 1.7e-09 | -0.06 | 0.94 | 0.00 | FALSE |
34 | GTEx | Nerve Tibial | SEC31B | 0.42 | 0.42 | lasso | 9 | 0.43 | 1.4e-32 | -6.0 | 5.9 | 4.4e-09 | 0.06 | 1.00 | 0.00 | FALSE |
35 | GTEx | Nerve Tibial | RP11-179B2.2 | 0.15 | 0.08 | lasso | 2 | 0.12 | 6.4e-09 | 11.3 | 9.2 | 4.8e-20 | 0.88 | 0.01 | 0.99 | FALSE |
36 | GTEx | Pancreas | SEC31B | 0.24 | 0.19 | lasso | 5 | 0.17 | 9.9e-08 | -6.0 | 5.8 | 5.7e-09 | 0.06 | 0.97 | 0.00 | FALSE |
37 | GTEx | Prostate | SEC31B | 0.18 | 0.14 | lasso | 2 | 0.12 | 6.7e-04 | -6.0 | 6.0 | 2.4e-09 | 0.05 | 0.38 | 0.05 | FALSE |
38 | GTEx | Skin Not Sun Exposed Suprapubic | SEC31B | 0.15 | 0.16 | lasso | 4 | 0.15 | 8.3e-09 | -6.0 | 6.0 | 2.4e-09 | 0.05 | 0.99 | 0.00 | FALSE |
39 | GTEx | Skin Not Sun Exposed Suprapubic | HIF1AN | 0.13 | 0.03 | lasso | 5 | 0.02 | 3.4e-02 | -6.1 | 6.2 | 4.1e-10 | 0.04 | 0.26 | 0.03 | TRUE |
40 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-179B2.2 | 0.27 | 0.15 | enet | 36 | 0.15 | 2.0e-08 | 11.5 | 9.8 | 1.7e-22 | 0.75 | 0.00 | 1.00 | FALSE |
41 | GTEx | Skin Sun Exposed Lower leg | SEC31B | 0.20 | 0.34 | lasso | 4 | 0.34 | 8.3e-29 | -6.0 | 5.9 | 4.1e-09 | 0.06 | 1.00 | 0.00 | FALSE |
42 | GTEx | Skin Sun Exposed Lower leg | HIF1AN | 0.07 | 0.05 | lasso | 8 | 0.03 | 2.2e-03 | -6.2 | 6.0 | 1.6e-09 | 0.06 | 0.93 | 0.00 | FALSE |
43 | GTEx | Skin Sun Exposed Lower leg | RP11-179B2.2 | 0.12 | 0.09 | lasso | 2 | 0.08 | 1.7e-07 | 9.2 | 8.9 | 8.1e-19 | 0.86 | 0.06 | 0.94 | FALSE |
44 | GTEx | Spleen | SEC31B | 0.21 | 0.12 | lasso | 3 | 0.05 | 2.3e-02 | -6.0 | 6.1 | 1.0e-09 | 0.05 | 0.28 | 0.09 | FALSE |
45 | GTEx | Testis | SEC31B | 0.11 | 0.11 | lasso | 5 | 0.08 | 2.5e-04 | -6.0 | 6.0 | 1.6e-09 | 0.05 | 0.84 | 0.01 | FALSE |
46 | GTEx | Testis | HIF1AN | 0.12 | 0.08 | lasso | 3 | 0.06 | 1.6e-03 | -6.2 | 6.2 | 4.1e-10 | 0.08 | 0.34 | 0.04 | FALSE |
47 | GTEx | Thyroid | SEC31B | 0.28 | 0.32 | lasso | 5 | 0.31 | 4.9e-24 | -6.0 | 5.7 | 1.0e-08 | 0.03 | 1.00 | 0.00 | FALSE |
48 | GTEx | Thyroid | RP11-179B2.2 | 0.18 | 0.12 | lasso | 7 | 0.11 | 8.3e-09 | 9.3 | 10.1 | 7.3e-24 | 0.91 | 0.04 | 0.96 | FALSE |
49 | GTEx | Uterus | SEC31B | 0.40 | 0.14 | lasso | 18 | 0.05 | 3.1e-02 | -6.1 | 5.9 | 3.3e-09 | 0.02 | 0.36 | 0.04 | FALSE |
50 | GTEx | Whole Blood | SEC31B | 0.11 | 0.14 | lasso | 7 | 0.12 | 1.8e-11 | -5.4 | 5.2 | 1.6e-07 | 0.09 | 1.00 | 0.00 | FALSE |
51 | GTEx | Whole Blood | HIF1AN | 0.15 | 0.12 | enet | 7 | 0.12 | 8.7e-11 | -6.2 | 6.1 | 8.1e-10 | 0.06 | 1.00 | 0.00 | FALSE |
52 | METSIM | Adipose | MRPL43 | 0.05 | 0.04 | bslmm | 422 | 0.04 | 1.9e-06 | -5.1 | 7.9 | 2.1e-15 | 0.46 | 0.94 | 0.02 | FALSE |
53 | METSIM | Adipose | SEC31B | 0.15 | 0.27 | enet | 29 | 0.28 | 1.0e-41 | -5.9 | 5.6 | 1.7e-08 | 0.05 | 1.00 | 0.00 | FALSE |
54 | NTR | Blood | HIF1AN | 0.02 | 0.03 | lasso | 2 | 0.02 | 1.4e-07 | -6.0 | 6.1 | 1.2e-09 | 0.05 | 1.00 | 0.00 | FALSE |
55 | NTR | Blood | SEC31B | 0.03 | 0.03 | lasso | 4 | 0.03 | 1.1e-10 | -6.0 | 6.0 | 2.6e-09 | 0.06 | 1.00 | 0.00 | FALSE |
56 | ROSMAP | Brain Pre-frontal Cortex | MRPL43 | 0.10 | 0.08 | bslmm | 411 | 0.09 | 1.2e-11 | -5.1 | -6.5 | 5.8e-11 | -0.56 | 1.00 | 0.00 | FALSE |
57 | ROSMAP | Brain Pre-frontal Cortex | SEC31B | 0.13 | 0.17 | enet | 36 | 0.18 | 3.0e-22 | -5.9 | 5.6 | 2.1e-08 | 0.05 | 1.00 | 0.00 | FALSE |
58 | YFS | Blood | HIF1AN | 0.06 | 0.06 | lasso | 30 | 0.07 | 2.5e-22 | -5.4 | 5.5 | 3.9e-08 | 0.07 | 1.00 | 0.00 | FALSE |
59 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MRPL43 | 0.02 | 0.02 | enet | 4 | 0.03 | 1.5e-06 | -5.1 | -5.4 | 6.2e-08 | -0.51 | 0.98 | 0.00 | FALSE |
60 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SEC31B | 0.09 | 0.13 | blup | 51 | 0.15 | 7.1e-29 | -6.0 | 5.7 | 1.0e-08 | 0.05 | 0.04 | 0.96 | FALSE |
61 | The Cancer Genome Atlas | Colon Adenocarcinoma | HIF1AN | 0.07 | 0.03 | blup | 40 | 0.05 | 4.9e-04 | -6.0 | 6.1 | 9.9e-10 | 0.05 | 0.03 | 0.84 | FALSE |
62 | The Cancer Genome Atlas | Colon Adenocarcinoma | MRPL43 | 0.07 | 0.02 | blup | 52 | 0.00 | 1.7e-01 | 10.9 | -10.4 | 3.8e-25 | -0.80 | 0.01 | 0.82 | FALSE |
63 | The Cancer Genome Atlas | Colon Adenocarcinoma | SEC31B | 0.06 | 0.07 | blup | 51 | 0.08 | 2.9e-05 | -5.4 | 6.0 | 2.6e-09 | 0.06 | 0.04 | 0.95 | FALSE |
64 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MRPL43 | 0.03 | 0.02 | blup | 52 | 0.03 | 3.0e-04 | -4.8 | -7.4 | 1.7e-13 | -0.68 | 0.10 | 0.50 | FALSE |
65 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SEC31B | 0.05 | 0.05 | blup | 51 | 0.05 | 1.3e-06 | -6.0 | 6.0 | 2.1e-09 | 0.05 | 0.03 | 0.97 | FALSE |
66 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SEC31B | 0.05 | 0.05 | blup | 51 | 0.05 | 8.9e-07 | -6.0 | 6.0 | 2.3e-09 | 0.06 | 0.03 | 0.97 | FALSE |
67 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SEMA4G | 0.04 | 0.01 | blup | 52 | 0.02 | 1.2e-03 | 9.2 | 9.4 | 4.0e-21 | 0.83 | 0.01 | 0.79 | FALSE |
68 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SEC31B | 0.14 | 0.10 | lasso | 7 | 0.10 | 1.6e-06 | -6.1 | 6.1 | 1.1e-09 | 0.05 | 0.03 | 0.97 | FALSE |
69 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NDUFB8 | 0.02 | 0.01 | blup | 38 | 0.01 | 1.6e-02 | -5.4 | -6.0 | 1.4e-09 | -0.06 | 0.03 | 0.59 | FALSE |
70 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SEC31B | 0.06 | 0.06 | blup | 51 | 0.06 | 1.1e-07 | -6.0 | 6.2 | 7.6e-10 | 0.05 | 0.03 | 0.97 | FALSE |
71 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SEMA4G | 0.03 | 0.01 | blup | 52 | 0.01 | 4.2e-02 | 11.3 | 8.7 | 4.9e-18 | 0.83 | 0.00 | 0.90 | FALSE |
72 | The Cancer Genome Atlas | Brain Lower Grade Glioma | WNT8B | 0.07 | 0.10 | blup | 34 | 0.11 | 1.7e-12 | -5.4 | -5.4 | 8.5e-08 | -0.07 | 0.08 | 0.92 | FALSE |
73 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MRPL43 | 0.05 | 0.05 | enet | 9 | 0.05 | 3.0e-03 | -5.1 | -5.4 | 6.0e-08 | -0.44 | 0.12 | 0.07 | FALSE |
74 | The Cancer Genome Atlas | Lung Adenocarcinoma | SEC31B | 0.06 | 0.08 | enet | 10 | 0.09 | 4.6e-11 | -6.0 | 5.8 | 5.9e-09 | 0.06 | 0.03 | 0.97 | FALSE |
75 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SEC31B | 0.11 | 0.12 | enet | 15 | 0.13 | 1.5e-14 | -6.1 | 5.8 | 8.9e-09 | 0.06 | 0.03 | 0.97 | FALSE |
76 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MRPL43 | 0.06 | 0.04 | blup | 51 | 0.04 | 7.4e-04 | -5.1 | -6.1 | 9.9e-10 | -0.52 | 0.55 | 0.08 | FALSE |
77 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SEC31B | 0.10 | 0.09 | blup | 51 | 0.10 | 2.5e-07 | -4.4 | 5.4 | 5.9e-08 | 0.07 | 0.07 | 0.93 | FALSE |
78 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SEC31B | 0.15 | 0.14 | lasso | 12 | 0.15 | 8.5e-07 | -5.9 | 6.0 | 2.1e-09 | 0.06 | 0.03 | 0.96 | FALSE |
79 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | FAM178A | 0.14 | 0.08 | lasso | 2 | 0.08 | 5.9e-04 | -9.1 | -8.1 | 7.4e-16 | -0.54 | 0.07 | 0.13 | FALSE |
80 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MRPL43 | 0.13 | 0.16 | lasso | 10 | 0.15 | 2.4e-15 | -5.1 | -5.3 | 8.9e-08 | -0.41 | 1.00 | 0.00 | FALSE |
81 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SEC31B | 0.23 | 0.23 | enet | 20 | 0.26 | 8.6e-27 | -5.9 | 5.4 | 6.2e-08 | 0.06 | 0.06 | 0.94 | FALSE |
82 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MRPL43 | 0.10 | 0.07 | blup | 51 | 0.09 | 3.3e-07 | -5.1 | -5.3 | 9.4e-08 | -0.42 | 0.98 | 0.01 | FALSE |
83 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SEC31B | 0.07 | 0.09 | blup | 51 | 0.09 | 4.1e-07 | -5.5 | 5.6 | 1.7e-08 | 0.07 | 0.12 | 0.88 | FALSE |
84 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SEC31B | 0.24 | 0.20 | blup | 51 | 0.28 | 1.7e-10 | -6.1 | 5.8 | 7.1e-09 | 0.06 | 0.05 | 0.95 | FALSE |
85 | The Cancer Genome Atlas | Thyroid Carcinoma | SEC31B | 0.12 | 0.19 | blup | 51 | 0.20 | 1.1e-18 | -5.4 | 5.8 | 6.9e-09 | 0.07 | 0.41 | 0.59 | FALSE |
86 | The Cancer Genome Atlas | Thyroid Carcinoma | SEMA4G | 0.07 | 0.08 | blup | 52 | 0.08 | 5.1e-08 | -4.8 | 7.8 | 8.4e-15 | 0.75 | 0.04 | 0.96 | FALSE |