Best TWAS P=2.16e-19 · Best GWAS P=9.95e-41 conditioned to 6.78e-21
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Artery Coronary | PIGK | 0.22 | 0.00 | lasso | 8 | -0.01 | 9.0e-01 | 5.0 | -5.3 | 9.1e-08 | -0.10 | 0.09 | 0.06 | TRUE |
| 2 | GTEx | Cells EBV-transformed lymphocytes | NEXN | 0.23 | 0.10 | lasso | 3 | 0.08 | 1.4e-03 | -6.7 | -7.1 | 1.2e-12 | -0.13 | 0.21 | 0.04 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | PTGFR | 0.12 | 0.04 | enet | 17 | 0.04 | 4.7e-04 | 4.4 | -6.7 | 1.9e-11 | -0.26 | 0.97 | 0.00 | FALSE |
| 4 | GTEx | Lung | GIPC2 | 0.15 | 0.09 | enet | 17 | 0.12 | 2.5e-09 | -6.9 | 7.5 | 4.9e-14 | 0.19 | 1.00 | 0.00 | FALSE |
| 5 | GTEx | Nerve Tibial | DNAJB4 | 0.08 | 0.07 | lasso | 3 | 0.07 | 1.3e-05 | -6.7 | -6.8 | 1.5e-11 | -0.14 | 0.82 | 0.01 | FALSE |
| 6 | GTEx | Pancreas | GIPC2 | 0.41 | 0.13 | enet | 29 | 0.14 | 1.1e-06 | -6.3 | 6.9 | 5.1e-12 | 0.31 | 0.65 | 0.10 | FALSE |
| 7 | GTEx | Skin Sun Exposed Lower leg | DNAJB4 | 0.07 | 0.05 | lasso | 5 | 0.05 | 6.5e-05 | -6.7 | -6.4 | 2.0e-10 | -0.11 | 0.60 | 0.01 | FALSE |
| 8 | GTEx | Spleen | GIPC2 | 0.43 | 0.07 | enet | 19 | 0.22 | 2.9e-06 | -7.2 | 7.7 | 1.3e-14 | 0.22 | 0.83 | 0.02 | FALSE |
| 9 | METSIM | Adipose | DNAJB4 | 0.04 | 0.04 | lasso | 4 | 0.03 | 2.1e-05 | -6.7 | -7.3 | 2.6e-13 | -0.26 | 0.70 | 0.01 | FALSE |
| 10 | ROSMAP | Brain Pre-frontal Cortex | DNAJB4 | 0.08 | 0.09 | lasso | 2 | 0.09 | 1.3e-11 | -6.6 | -6.7 | 2.8e-11 | -0.18 | 1.00 | 0.00 | FALSE |
| 11 | ROSMAP | Brain Pre-frontal Cortex | FAM73A | 0.09 | 0.04 | enet | 19 | 0.06 | 9.6e-09 | -2.8 | 7.0 | 3.0e-12 | 0.33 | 0.99 | 0.01 | FALSE |
| 12 | YFS | Blood | NEXN | 0.02 | 0.01 | blup | 367 | 0.02 | 1.2e-06 | -5.9 | 5.3 | 1.0e-07 | 0.09 | 0.59 | 0.01 | TRUE |
| 13 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DNAJB4 | 0.05 | 0.03 | lasso | 3 | 0.02 | 3.3e-03 | -6.3 | -7.1 | 9.4e-13 | -0.20 | 0.30 | 0.09 | FALSE |
| 14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GIPC2 | 0.02 | 0.02 | lasso | 2 | 0.02 | 8.3e-05 | -6.2 | 6.3 | 2.3e-10 | 0.24 | 0.56 | 0.02 | FALSE |
| 15 | The Cancer Genome Atlas | Colon Adenocarcinoma | GIPC2 | 0.04 | 0.01 | blup | 65 | 0.00 | 2.5e-01 | -6.4 | 8.5 | 2.2e-17 | 0.28 | 0.07 | 0.06 | FALSE |
| 16 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | USP33 | 0.07 | 0.02 | blup | 42 | 0.01 | 7.7e-03 | -2.3 | -5.5 | 3.1e-08 | -0.21 | 0.06 | 0.03 | FALSE |
| 17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GIPC2 | 0.10 | 0.06 | enet | 13 | 0.06 | 1.5e-07 | -6.8 | 7.4 | 1.1e-13 | 0.37 | 0.96 | 0.00 | FALSE |
| 18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNAJB4 | 0.08 | 0.07 | lasso | 1 | 0.06 | 9.3e-08 | -6.3 | -6.3 | 3.5e-10 | -0.19 | 0.97 | 0.00 | FALSE |
| 19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | GIPC2 | 0.02 | 0.02 | lasso | 3 | 0.02 | 1.0e-03 | -7.2 | 7.2 | 5.0e-13 | 0.22 | 0.37 | 0.02 | FALSE |
| 20 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJB4 | 0.04 | 0.04 | lasso | 2 | 0.04 | 1.2e-05 | 9.0 | -9.0 | 2.2e-19 | -0.45 | 0.00 | 1.00 | TRUE |
| 21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GIPC2 | 0.10 | 0.11 | blup | 64 | 0.13 | 1.1e-13 | -7.0 | 5.5 | 4.0e-08 | 0.13 | 1.00 | 0.00 | FALSE |
| 22 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DNAJB4 | 0.24 | 0.14 | lasso | 1 | 0.11 | 1.1e-04 | -6.3 | -6.3 | 3.5e-10 | -0.19 | 0.10 | 0.20 | FALSE |
| 23 | The Cancer Genome Atlas | Thyroid Carcinoma | GIPC2 | 0.07 | 0.05 | blup | 64 | 0.06 | 1.5e-06 | -7.3 | 7.7 | 1.8e-14 | 0.28 | 0.67 | 0.02 | FALSE |