TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of leg (right)
:
←
→
chr19:49,583,640-51,068,215
Best TWAS P=3.72e-10 · Best GWAS P=2.89e-08 conditioned to 0.423
49.6M
49.8M
50M
50.2M
50.4M
50.6M
50.8M
51M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Nerve Tibial
AP2A1
0.16
0.05
lasso
4
0.07
1.3e-05
4.9
6.3
3.7e-10
0.81
0.05
0.94
TRUE
1
GTEx
Esophagus Mucosa
AP2A1
0.18
0.09
enet
8
0.13
7.7e-09
4.5
6.0
1.5e-09
0.76
0.08
0.92
FALSE
2
GTEx
Muscle Skeletal
AKT1S1
0.10
0.09
lasso
3
0.08
1.9e-08
5.5
-5.5
4.9e-08
-0.98
0.01
0.99
FALSE
4
The Cancer Genome Atlas
Lung Adenocarcinoma
PNKP
0.03
0.00
blup
46
0.02
4.0e-03
5.3
5.2
2.0e-07
0.79
0.01
0.33
FALSE