Best TWAS P=9.45e-15 · Best GWAS P=4.02e-16 conditioned to 0.00755
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | POC5 | 0.17 | 0.16 | lasso | 5 | 0.15 | 5.2e-18 | 7.7 | -7.8 | 9.5e-15 | -0.90 | 0.04 | 0.96 | TRUE |
2 | GTEx | Adipose Subcutaneous | POC5 | 0.08 | 0.07 | lasso | 7 | 0.07 | 3.2e-06 | 5.8 | 5.7 | 9.6e-09 | 0.56 | 0.96 | 0.00 | FALSE |
3 | GTEx | Adipose Visceral Omentum | POC5 | 0.13 | 0.08 | lasso | 9 | 0.08 | 6.1e-05 | 5.4 | 5.5 | 3.9e-08 | 0.60 | 0.82 | 0.07 | FALSE |
4 | GTEx | Adrenal Gland | GCNT4 | 0.13 | 0.02 | lasso | 8 | 0.01 | 1.3e-01 | 5.6 | 6.2 | 6.5e-10 | 0.49 | 0.07 | 0.83 | FALSE |
5 | GTEx | Artery Tibial | GCNT4 | 0.08 | 0.07 | lasso | 2 | 0.04 | 3.9e-04 | 5.6 | -5.6 | 1.8e-08 | -0.44 | 0.64 | 0.12 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | POLK | 0.27 | 0.20 | lasso | 6 | 0.16 | 8.3e-05 | 5.2 | 5.9 | 4.7e-09 | 0.64 | 0.33 | 0.18 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | POC5 | 0.31 | 0.15 | enet | 18 | 0.30 | 1.6e-08 | 5.8 | 6.3 | 2.2e-10 | 0.61 | 0.54 | 0.32 | FALSE |
8 | GTEx | Brain Hypothalamus | CTC-366B18.4 | 0.26 | 0.12 | lasso | 8 | 0.07 | 9.0e-03 | 5.8 | -5.8 | 6.3e-09 | -0.56 | 0.10 | 0.09 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | POC5 | 0.47 | 0.36 | lasso | 4 | 0.39 | 1.3e-13 | 5.8 | 5.7 | 1.5e-08 | 0.57 | 1.00 | 0.00 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | POLK | 0.06 | 0.04 | lasso | 3 | 0.04 | 1.0e-03 | 5.8 | -5.8 | 5.8e-09 | -0.61 | 0.22 | 0.53 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | POC5 | 0.15 | 0.17 | lasso | 6 | 0.16 | 3.4e-12 | 5.4 | 5.4 | 6.3e-08 | 0.57 | 1.00 | 0.00 | FALSE |
12 | GTEx | Esophagus Mucosa | POC5 | 0.18 | 0.16 | lasso | 1 | 0.15 | 4.8e-10 | 5.4 | 5.4 | 6.3e-08 | 0.57 | 1.00 | 0.00 | FALSE |
13 | GTEx | Nerve Tibial | POC5 | 0.16 | 0.12 | lasso | 5 | 0.10 | 7.6e-08 | 5.4 | 5.4 | 5.6e-08 | 0.57 | 0.99 | 0.00 | FALSE |
14 | GTEx | Pancreas | POC5 | 0.32 | 0.23 | lasso | 3 | 0.21 | 3.5e-09 | 5.4 | 5.6 | 2.7e-08 | 0.57 | 1.00 | 0.00 | FALSE |
15 | GTEx | Spleen | POLK | 0.18 | -0.01 | lasso | 16 | 0.03 | 5.1e-02 | 3.2 | 6.5 | 6.6e-11 | 0.59 | 0.16 | 0.24 | FALSE |
16 | GTEx | Spleen | POC5 | 0.42 | 0.37 | lasso | 4 | 0.34 | 1.3e-09 | 5.8 | 5.9 | 4.7e-09 | 0.57 | 0.92 | 0.05 | FALSE |
17 | GTEx | Spleen | CTC-366B18.2 | 0.16 | 0.11 | lasso | 3 | 0.14 | 2.2e-04 | 5.8 | 6.9 | 5.3e-12 | 0.72 | 0.14 | 0.51 | FALSE |
18 | GTEx | Testis | POC5 | 0.27 | 0.13 | lasso | 8 | 0.09 | 8.1e-05 | 6.1 | -5.6 | 2.4e-08 | -0.65 | 0.49 | 0.33 | FALSE |
19 | GTEx | Testis | GCNT4 | 0.42 | 0.35 | enet | 62 | 0.37 | 3.8e-17 | 4.5 | 5.6 | 1.7e-08 | 0.50 | 1.00 | 0.00 | FALSE |
20 | GTEx | Thyroid | CTC-366B18.2 | 0.06 | 0.03 | lasso | 9 | 0.02 | 6.2e-03 | 5.7 | 5.4 | 5.9e-08 | 0.62 | 0.28 | 0.21 | FALSE |
21 | METSIM | Adipose | POLK | 0.05 | 0.01 | enet | 16 | 0.03 | 4.3e-05 | 6.7 | 6.9 | 4.0e-12 | 0.58 | 0.91 | 0.08 | FALSE |
22 | ROSMAP | Brain Pre-frontal Cortex | POLK | 0.03 | 0.01 | lasso | 7 | 0.02 | 3.9e-03 | 6.0 | 6.7 | 1.6e-11 | 0.81 | 0.27 | 0.63 | FALSE |
23 | ROSMAP | Brain Pre-frontal Cortex | POC5 | 0.05 | 0.00 | blup | 384 | 0.02 | 8.6e-04 | 5.4 | 5.2 | 2.0e-07 | 0.57 | 0.29 | 0.14 | FALSE |
24 | ROSMAP | Brain Pre-frontal Cortex | ANKDD1B | 0.07 | 0.00 | bslmm | 382 | 0.03 | 7.0e-05 | 2.9 | -6.1 | 1.2e-09 | -0.63 | 0.08 | 0.57 | FALSE |
25 | The Cancer Genome Atlas | Brain Lower Grade Glioma | POC5 | 0.04 | 0.00 | enet | 7 | 0.03 | 2.1e-04 | 7.7 | -5.8 | 5.1e-09 | -0.77 | 0.02 | 0.60 | FALSE |
26 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | HMGCR | 0.04 | 0.02 | enet | 4 | 0.03 | 6.0e-03 | 5.8 | 5.6 | 2.7e-08 | 0.57 | 0.02 | 0.70 | FALSE |
27 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | POC5 | 0.24 | 0.13 | blup | 70 | 0.14 | 1.2e-04 | 5.4 | 5.6 | 2.3e-08 | 0.73 | 0.06 | 0.79 | FALSE |