Best TWAS P=1.13e-12 · Best GWAS P=1.85e-13 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADCY3 | 0.16 | 0.12 | lasso | 10 | 0.14 | 3.2e-17 | -6.7 | 6.4 | 2.0e-10 | -0.05 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | UBXN2A | 0.22 | 0.18 | enet | 28 | 0.24 | 3.0e-28 | 6.2 | -6.7 | 2.6e-11 | -0.93 | 0.01 | 0.99 | FALSE |
3 | GTEx | Adipose Subcutaneous | ADCY3 | 0.07 | 0.04 | lasso | 6 | 0.01 | 3.2e-02 | -6.0 | -5.3 | 1.2e-07 | -0.01 | 0.12 | 0.85 | TRUE |
4 | GTEx | Adipose Visceral Omentum | PFN4 | 0.08 | 0.02 | enet | 14 | 0.04 | 3.1e-03 | 4.4 | 5.8 | 5.6e-09 | 0.66 | 0.04 | 0.59 | FALSE |
5 | GTEx | Artery Tibial | ADCY3 | 0.21 | 0.14 | lasso | 6 | 0.15 | 4.3e-12 | -5.1 | -5.2 | 2.0e-07 | 0.02 | 0.98 | 0.02 | TRUE |
6 | GTEx | Artery Tibial | RP11-443B20.1 | 0.17 | 0.08 | enet | 40 | 0.09 | 8.2e-08 | -5.1 | -5.3 | 1.1e-07 | 0.03 | 0.54 | 0.41 | FALSE |
7 | GTEx | Cells EBV-transformed lymphocytes | ADCY3 | 0.25 | 0.23 | enet | 10 | 0.12 | 9.2e-05 | -6.0 | 5.9 | 3.8e-09 | 0.06 | 0.04 | 0.94 | TRUE |
8 | GTEx | Cells EBV-transformed lymphocytes | PFN4 | 0.18 | 0.13 | lasso | 12 | 0.12 | 8.9e-05 | 4.4 | 5.8 | 7.3e-09 | 0.78 | 0.09 | 0.75 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | RP11-443B20.1 | 0.13 | 0.13 | enet | 9 | 0.05 | 9.2e-03 | -6.0 | 6.5 | 5.8e-11 | 0.03 | 0.02 | 0.94 | FALSE |
10 | GTEx | Esophagus Gastroesophageal Junction | PFN4 | 0.13 | 0.01 | lasso | 12 | 0.01 | 9.7e-02 | 6.8 | 6.2 | 8.0e-10 | 0.73 | 0.07 | 0.44 | FALSE |
11 | GTEx | Heart Atrial Appendage | UBXN2A | 0.08 | 0.02 | lasso | 3 | 0.02 | 5.2e-02 | 7.0 | 6.6 | 3.6e-11 | 0.93 | 0.03 | 0.92 | FALSE |
12 | GTEx | Heart Atrial Appendage | PFN4 | 0.22 | 0.06 | lasso | 7 | 0.10 | 2.8e-05 | -2.4 | 5.8 | 6.3e-09 | 0.62 | 0.16 | 0.76 | FALSE |
13 | GTEx | Heart Left Ventricle | PFN4 | 0.23 | 0.28 | lasso | 6 | 0.28 | 4.1e-15 | 4.4 | 5.3 | 1.2e-07 | 0.76 | 0.98 | 0.02 | FALSE |
14 | GTEx | Nerve Tibial | ADCY3 | 0.09 | 0.05 | enet | 6 | 0.03 | 2.2e-03 | -5.1 | 6.7 | 2.9e-11 | -0.01 | 0.02 | 0.98 | TRUE |
15 | GTEx | Nerve Tibial | RP11-443B20.1 | 0.07 | 0.03 | enet | 6 | 0.02 | 1.1e-02 | -5.1 | 6.2 | 4.2e-10 | -0.02 | 0.05 | 0.93 | FALSE |
16 | GTEx | Whole Blood | DNAJC27 | 0.08 | 0.10 | lasso | 1 | 0.10 | 2.2e-09 | -5.6 | -5.6 | 2.4e-08 | -0.02 | 0.90 | 0.10 | FALSE |
17 | GTEx | Whole Blood | ADCY3 | 0.23 | 0.24 | enet | 24 | 0.27 | 5.5e-25 | -5.6 | -6.0 | 1.9e-09 | -0.01 | 0.94 | 0.06 | FALSE |
18 | GTEx | Whole Blood | RP11-443B20.1 | 0.21 | 0.17 | enet | 32 | 0.20 | 1.8e-18 | -5.6 | -6.2 | 5.3e-10 | 0.02 | 0.79 | 0.21 | FALSE |
19 | METSIM | Adipose | PFN4 | 0.04 | 0.01 | blup | 306 | 0.03 | 1.9e-05 | 4.5 | 6.1 | 1.3e-09 | 0.72 | 0.20 | 0.69 | FALSE |
20 | METSIM | Adipose | UBXN2A | 0.07 | 0.03 | bslmm | 403 | 0.06 | 5.3e-10 | 2.9 | 5.4 | 7.1e-08 | 0.78 | 0.15 | 0.85 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | ADCY3 | 0.17 | 0.26 | enet | 32 | 0.26 | 6.8e-33 | -5.6 | 6.1 | 1.1e-09 | 0.01 | 0.85 | 0.15 | FALSE |
22 | ROSMAP | Brain Pre-frontal Cortex | UBXN2A | 0.03 | 0.01 | lasso | 4 | 0.02 | 2.2e-03 | 6.9 | -7.1 | 1.1e-12 | -0.80 | 0.02 | 0.93 | TRUE |
23 | YFS | Blood | POMC | 0.35 | 0.05 | enet | 71 | 0.19 | 5.7e-59 | 7.1 | 6.5 | 1.0e-10 | -0.05 | 0.00 | 1.00 | FALSE |
24 | The Cancer Genome Atlas | Breast Invasive Carcinoma | POMC | 0.08 | 0.05 | lasso | 3 | 0.06 | 2.6e-12 | 2.8 | 5.2 | 1.5e-07 | -0.03 | 0.63 | 0.37 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EFR3B | 0.03 | 0.05 | lasso | 1 | 0.04 | 1.9e-05 | 5.8 | 5.8 | 6.9e-09 | -0.05 | 0.08 | 0.86 | FALSE |
26 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | POMC | 0.16 | 0.05 | blup | 39 | 0.11 | 2.4e-12 | 7.1 | 5.7 | 1.1e-08 | 0.00 | 0.00 | 1.00 | TRUE |
27 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ADCY3 | 0.03 | 0.02 | blup | 81 | 0.02 | 7.1e-04 | -3.9 | 5.9 | 4.3e-09 | 0.05 | 0.04 | 0.93 | TRUE |
28 | The Cancer Genome Atlas | Brain Lower Grade Glioma | UBXN2A | 0.04 | 0.04 | lasso | 1 | 0.03 | 1.4e-04 | 7.0 | -7.0 | 3.1e-12 | -0.96 | 0.02 | 0.96 | FALSE |
29 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAJC27 | 0.05 | 0.01 | blup | 46 | 0.04 | 3.2e-05 | -3.1 | 5.1 | 2.7e-07 | 0.13 | 0.36 | 0.59 | TRUE |
30 | The Cancer Genome Atlas | Lung Adenocarcinoma | POMC | 0.14 | 0.04 | enet | 7 | 0.08 | 5.3e-10 | 2.8 | 5.2 | 1.7e-07 | -0.06 | 0.11 | 0.89 | FALSE |
31 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | POMC | 0.19 | 0.01 | blup | 38 | 0.05 | 1.5e-04 | 7.1 | 5.9 | 3.4e-09 | -0.06 | 0.00 | 0.85 | FALSE |
32 | The Cancer Genome Atlas | Prostate Adenocarcinoma | POMC | 0.11 | 0.08 | enet | 7 | 0.09 | 1.6e-09 | 2.8 | 5.8 | 8.3e-09 | -0.04 | 0.13 | 0.87 | FALSE |
33 | The Cancer Genome Atlas | Stomach Adenocarcinoma | POMC | 0.14 | 0.00 | blup | 40 | 0.02 | 2.2e-02 | 3.5 | 5.4 | 6.4e-08 | 0.01 | 0.00 | 0.62 | FALSE |